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3LTF
Asym. Unit
Info
Asym.Unit (394 KB)
Biol.Unit 1 (384 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE DROSOPHILA EPIDERMAL GROWTH FACTOR RECEPTOR ECTODOMAIN IN COMPLEX WITH SPITZ
Authors
:
D. Alvarado, D. E. Klein, M. A. Lemmon
Date
:
15 Feb 10 (Deposition) - 25 Aug 10 (Release) - 08 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Receptor-Ligand Complex Ectodomain Cysteine Rich Domain Egf Domain, Atp-Binding, Kinase, Nucleotide-Binding, Receptor, Transferase, Tyrosine-Protein Kinase, Cell Membrane, Developmental Protein, Differentiation, Disulfide Bond, Egf-Like Domain, Endoplasmic Reticulum, Glycoprotein, Golgi Apparatus, Membrane, Neurogenesis, Transmembrane, Transferase-Transferase Regulator Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
D. Alvarado, D. E. Klein, M. A. Lemmon
Structural Basis For Negative Cooperativity In Growth Facto Binding To An Egf Receptor.
Cell(Cambridge, Mass. ) V. 142 568 2010
[
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Hetero Components
(3, 16)
Info
All Hetero Components
1a: ALPHA-D-MANNOSE (MANa)
1b: ALPHA-D-MANNOSE (MANb)
1c: ALPHA-D-MANNOSE (MANc)
1d: ALPHA-D-MANNOSE (MANd)
1e: ALPHA-D-MANNOSE (MANe)
1f: ALPHA-D-MANNOSE (MANf)
2a: MALONATE ION (MLIa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MAN
6
Ligand/Ion
ALPHA-D-MANNOSE
2
MLI
1
Ligand/Ion
MALONATE ION
3
NAG
9
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:414 , ASP A:436 , LEU A:466 , LYS A:469 , ASN A:470 , NAG A:4701
BINDING SITE FOR RESIDUE NAG A 4700
02
AC2
SOFTWARE
TYR A:414 , ARG A:435 , ASP A:436 , LEU A:462 , NAG A:4700 , MAN A:4702
BINDING SITE FOR RESIDUE NAG A 4701
03
AC3
SOFTWARE
ARG A:435 , NAG A:4701 , MAN A:4703 , MAN A:4705
BINDING SITE FOR RESIDUE MAN A 4702
04
AC4
SOFTWARE
HIS A:433 , GLU A:460 , MAN A:4702 , MAN A:4704 , LEU C:466
BINDING SITE FOR RESIDUE MAN A 4703
05
AC5
SOFTWARE
MAN A:4703 , LEU C:466 , NAG C:4700 , NAG C:4701
BINDING SITE FOR RESIDUE MAN A 4704
06
AC6
SOFTWARE
ARG A:435 , MAN A:4702
BINDING SITE FOR RESIDUE MAN A 4705
07
AC7
SOFTWARE
ASN C:29
BINDING SITE FOR RESIDUE NAG C 596
08
AC8
SOFTWARE
GLN A:380 , ASN A:383
BINDING SITE FOR RESIDUE NAG A 3830
09
AC9
SOFTWARE
ASN C:344 , THR C:346
BINDING SITE FOR RESIDUE NAG C 3440
10
BC1
SOFTWARE
GLN C:380 , ASN C:383 , TYR C:386 , GLU C:417 , NAG C:3831
BINDING SITE FOR RESIDUE NAG C 3830
11
BC2
SOFTWARE
NAG C:3830
BINDING SITE FOR RESIDUE NAG C 3831
12
BC3
SOFTWARE
MAN A:4704 , TYR C:414 , ASP C:436 , LEU C:462 , LEU C:466 , ASN C:470 , NAG C:4701
BINDING SITE FOR RESIDUE NAG C 4700
13
BC4
SOFTWARE
MAN A:4704 , TYR C:414 , ARG C:435 , ASP C:436 , NAG C:4700 , MAN C:4702
BINDING SITE FOR RESIDUE NAG C 4701
14
BC5
SOFTWARE
ARG C:435 , NAG C:4701 , MAN C:4703
BINDING SITE FOR RESIDUE MAN C 4702
15
BC6
SOFTWARE
ARG A:463 , GLU C:460 , MAN C:4702
BINDING SITE FOR RESIDUE MAN C 4703
16
BC7
SOFTWARE
SER A:441 , ARG C:463 , ALA C:464
BINDING SITE FOR RESIDUE MLI A 596
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 4)
Info
All PROSITE Patterns/Profiles
1: EGF_3 (B:3-47,D:3-47)
2: EGF_1 (B:35-46,D:35-46)
3: EGF_2 (B:35-46,D:35-46)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_3
PS50026
EGF-like domain profile.
SPITZ_DROME
78-122
2
B:3-47
D:3-47
2
EGF_1
PS00022
EGF-like domain signature 1.
SPITZ_DROME
110-121
2
B:35-46
D:35-46
3
EGF_2
PS01186
EGF-like domain signature 2.
SPITZ_DROME
110-121
2
B:35-46
D:35-46
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(3, 8)
Info
all PFAM domains
1a: PFAM_EGF_3ltfD01 (D:7-45)
1b: PFAM_EGF_3ltfD02 (D:7-45)
2a: PFAM_Furin_like_3ltfC01 (C:153-305)
2b: PFAM_Furin_like_3ltfC02 (C:153-305)
3a: PFAM_Recep_L_domain_3ltfC03 (C:320-449)
3b: PFAM_Recep_L_domain_3ltfC04 (C:320-449)
3c: PFAM_Recep_L_domain_3ltfC05 (C:320-449)
3d: PFAM_Recep_L_domain_3ltfC06 (C:320-449)
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Clans
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Families
(
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(
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Organisms
(
)
(
)
Clan
:
EGF
(60)
Family
:
EGF
(31)
Drosophila melanogaster (Fruit fly)
(2)
1a
EGF-3ltfD01
D:7-45
1b
EGF-3ltfD02
D:7-45
Clan
:
no clan defined [family: Furin-like]
(12)
Family
:
Furin-like
(12)
Drosophila melanogaster (Fruit fly)
(2)
2a
Furin-like-3ltfC01
C:153-305
2b
Furin-like-3ltfC02
C:153-305
Clan
:
no clan defined [family: Recep_L_domain]
(12)
Family
:
Recep_L_domain
(12)
Drosophila melanogaster (Fruit fly)
(2)
3a
Recep_L_domain-3ltfC03
C:320-449
3b
Recep_L_domain-3ltfC04
C:320-449
3c
Recep_L_domain-3ltfC05
C:320-449
3d
Recep_L_domain-3ltfC06
C:320-449
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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