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3LPT
Asym. Unit
Info
Asym.Unit (34 KB)
Biol.Unit 1 (55 KB)
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(1)
Title
:
HIV INTEGRASE
Authors
:
S. Nicolet, F. Christ, A. Voet, A. Marchand, S. V. Strelkov, M. De Maeye P. Chaltin, Z. Debyzer
Date
:
05 Feb 10 (Deposition) - 12 May 10 (Release) - 09 Dec 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Hiv, Integrase, Ledgf/P75, Small Molecule, Inhibitor, Endonuclease, Hydrolase, Nuclease, Transferase, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Christ, A. Voet, A. Marchand, S. Nicolet, B. A. Desimmie, D. Marchand, D. Bardiot, N. J. Van Der Veken, B. Van Remoortel, S. V. Strelkov, M. De Maeyer, P. Chaltin, Z. Debyser
Rational Design Of Small-Molecule Inhibitors Of The Ledgf/P75-Integrase Interaction And Hiv Replication.
Nat. Chem. Biol. V. 6 442 2010
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Hetero Components
(7, 13)
Info
All Hetero Components
1a: (6-CHLORO-2-OXO-4-PHENYL-1,2-DIHYD... (723a)
3a: S-DIMETHYLARSINOYL-CYSTEINE (CAFa)
3b: S-DIMETHYLARSINOYL-CYSTEINE (CAFb)
2a: CALCIUM ION (CAa)
4a: CHLORIDE ION (CLa)
5a: 2-[3-[3-(2-HYDROXYETHOXY)PROPOXY]P... (P03a)
6a: DI(HYDROXYETHYL)ETHER (PEGa)
6b: DI(HYDROXYETHYL)ETHER (PEGb)
6c: DI(HYDROXYETHYL)ETHER (PEGc)
6d: DI(HYDROXYETHYL)ETHER (PEGd)
7a: SULFATE ION (SO4a)
7b: SULFATE ION (SO4b)
7c: SULFATE ION (SO4c)
View:
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Label:
No.
Name
Count
Type
Full Name
1
723
1
Ligand/Ion
(6-CHLORO-2-OXO-4-PHENYL-1,2-DIHYDROQUINOLIN-3-YL)ACETIC ACID
2
CA
1
Ligand/Ion
CALCIUM ION
3
CAF
2
Mod. Amino Acid
S-DIMETHYLARSINOYL-CYSTEINE
4
CL
1
Ligand/Ion
CHLORIDE ION
5
P03
1
Ligand/Ion
2-[3-[3-(2-HYDROXYETHOXY)PROPOXY]PROPOXY]ETHANOL
6
PEG
4
Ligand/Ion
DI(HYDROXYETHYL)ETHER
7
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:124 , THR A:125 , ALA A:128 , ALA A:129 , GLN A:168 , GLU A:170 , HIS A:171 , THR A:174 , MET A:178 , HOH A:447 , HOH A:452 , HOH A:456 , HOH A:461 , CL A:474
BINDING SITE FOR RESIDUE 723 A 1
02
AC2
SOFTWARE
HIS A:114 , THR A:124 , LYS A:127 , TRP A:131 , ILE A:141 , TYR A:143
BINDING SITE FOR RESIDUE PEG A 213
03
AC3
SOFTWARE
VAL A:79 , SER A:81 , GLY A:82 , GLU A:152 , ARG A:199
BINDING SITE FOR RESIDUE PEG A 2
04
AC4
SOFTWARE
GLN A:95 , GLU A:96 , TYR A:99 , LYS A:173 , HOH A:425
BINDING SITE FOR RESIDUE PEG A 3
05
AC5
SOFTWARE
ASP A:167 , HOH A:462 , CL A:474
BINDING SITE FOR RESIDUE P03 A 4
06
AC6
SOFTWARE
ILE A:203 , ASP A:207 , HOH A:415
BINDING SITE FOR RESIDUE PEG A 5
07
AC7
SOFTWARE
THR A:66 , HIS A:67 , LYS A:159 , HOH A:459
BINDING SITE FOR RESIDUE SO4 A 470
08
AC8
SOFTWARE
GLY A:94 , SER A:123 , THR A:124 , THR A:125 , LYS A:186 , HOH A:326 , HOH A:402 , HOH A:429
BINDING SITE FOR RESIDUE SO4 A 471
09
AC9
SOFTWARE
LYS A:71 , ARG A:166 , GLU A:170 , HIS A:171 , LEU A:172 , HOH A:322
BINDING SITE FOR RESIDUE SO4 A 472
10
BC1
SOFTWARE
THR A:124 , LYS A:160
BINDING SITE FOR RESIDUE CA A 473
11
BC2
SOFTWARE
723 A:1 , P03 A:4 , HOH A:452
BINDING SITE FOR RESIDUE CL A 474
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3lpta_ (A:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Ribonuclease H-like
(775)
Family
:
Retroviral integrase, catalytic domain
(152)
Protein domain
:
automated matches
(90)
Human immunodeficiency virus 1 [TaxId: 11676]
(61)
1a
d3lpta_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_rve_3lptA01 (A:55-162)
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Clans
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)
(
)
Clan
:
RNase_H
(288)
Family
:
rve
(46)
Human immunodeficiency virus type 1 group M subtype B (isolate NY5) (HIV-1)
(5)
1a
rve-3lptA01
A:55-162
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Chain A
Asymmetric Unit 1
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Asym.Unit (34 KB)
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