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Getting 'PROSITE' information from database.
3LP2
Biol. Unit 2
Info
Asym.Unit (164 KB)
Biol.Unit 1 (159 KB)
Biol.Unit 2 (313 KB)
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(1)
Title
:
HIV-1 REVERSE TRANSCRIPTASE WITH INHIBITOR
Authors
:
Y. Yan, S. K. Munshi, G. S. Prasad, H. P. Su
Date
:
04 Feb 10 (Deposition) - 09 Jun 10 (Release) - 21 Jul 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Reverse Transcriptase, Rnase H, Hiv, Aids, Aspartyl Protease, Capsid Maturation, Dna Integration, Dna-Directed Dna Polymerase, Endonuclease, Host Cytoplasm, Host Nucleus, Host-Virus Interaction, Hydrolase, Magnesium, Membrane, Metal-Binding, Multifunctional Enzyme, Nuclease, Nucleotidyltransferase, Protease, Rna-Binding, Rna-Directed Dna Polymerase, Transferase, Viral Nucleoprotein, Virion, Transferase-Hydrolase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. P. Su, Y. Yan, G. S. Prasad, R. F. Smith, C. L. Daniels, P. D. Abeywickrema, J. C. Reid, H. M. Loughran, M. Kornienko, S. Sharma J. A. Grobler, B. Xu, V. Sardana, T. J. Allison, P. D. Williams, P. L. Darke, D. J. Hazuda, S. Munshi
Structural Basis For The Inhibition Of Rnase H Activity Of Hiv-1 Reverse Transcriptase By Rnase H Active Site-Directed Inhibitors.
J. Virol. V. 84 7625 2010
[
close entry info
]
Hetero Components
(1, 2)
Info
All Hetero Components
1a: 3-[4-(DIETHYLAMINO)PHENOXY]-6-(ETH... (LP9a)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
LP9
2
Ligand/Ion
3-[4-(DIETHYLAMINO)PHENOXY]-6-(ETHOXYCARBONYL)-5,8-DIHYDROXY-7-OXO-7,8-DIHYDRO-1,8-NAPHTHYRIDIN-1-IUM
2
MN
-1
Ligand/Ion
MANGANESE (II) ION
[
close Hetero Component info
]
Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL A:108 , TYR A:181 , TYR A:183 , TYR A:188 , LYS A:223 , GLU A:224 , PRO A:226 , PHE A:227 , LEU A:228 , TRP A:229 , LEU A:234
BINDING SITE FOR RESIDUE LP9 A 601
2
AC2
SOFTWARE
ASP A:443 , ASP A:549 , ARG A:557 , MN A:603
BINDING SITE FOR RESIDUE MN A 602
3
AC3
SOFTWARE
ASP A:443 , GLY A:444 , GLU A:478 , ASP A:498 , MN A:602
BINDING SITE FOR RESIDUE MN A 603
[
close Site info
]
SAPs(SNPs)/Variants
(82, 320)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_POL_HV1H2_069 (M41L, chain A/B, )
02: VAR_POL_HV1H2_070 (E44A, chain A/B, )
03: VAR_POL_HV1H2_071 (E44D, chain A/B, )
04: VAR_POL_HV1H2_072 (P52R, chain A/B, )
05: VAR_POL_HV1H2_073 (N54D, chain A/B, )
06: VAR_POL_HV1H2_074 (A62V, chain A/B, )
07: VAR_POL_HV1H2_084 (T69A, chain A/B, )
08: VAR_POL_HV1H2_085 (T69D, chain A/B, )
09: VAR_POL_HV1H2_086 (T69G, chain A/B, )
10: VAR_POL_HV1H2_087 (T69N, chain A/B, )
11: VAR_POL_HV1H2_088 (K70E, chain A/B, )
12: VAR_POL_HV1H2_089 (K70R, chain A/B, )
13: VAR_POL_HV1H2_090 (K70S, chain A/B, )
14: VAR_POL_HV1H2_091 (L74I, chain A/B, )
15: VAR_POL_HV1H2_092 (L74V, chain A/B, )
16: VAR_POL_HV1H2_093 (V75I, chain A/B, )
17: VAR_POL_HV1H2_094 (V75L, chain A/B, )
18: VAR_POL_HV1H2_095 (V75M, chain A/B, )
19: VAR_POL_HV1H2_096 (V75T, chain A/B, )
20: VAR_POL_HV1H2_097 (F77L, chain A/B, )
21: VAR_POL_HV1H2_098 (W88G, chain A/B, )
22: VAR_POL_HV1H2_099 (W88S, chain A/B, )
23: VAR_POL_HV1H2_100 (E89G, chain A/B, )
24: VAR_POL_HV1H2_101 (E89K, chain A/B, )
25: VAR_POL_HV1H2_102 (L92I, chain A/B, )
26: VAR_POL_HV1H2_103 (L100I, chain A/B, )
27: VAR_POL_HV1H2_104 (K101E, chain A/B, )
28: VAR_POL_HV1H2_105 (K101P, chain A/B, )
29: VAR_POL_HV1H2_106 (K101Q, chain A/B, )
30: VAR_POL_HV1H2_107 (N103E, chain A/B, )
31: VAR_POL_HV1H2_108 (N103N, chain A/B, )
32: VAR_POL_HV1H2_109 (N103R, chain A/B, )
33: VAR_POL_HV1H2_110 (V106A, chain A/B, )
34: VAR_POL_HV1H2_111 (V106I, chain A/B, )
35: VAR_POL_HV1H2_112 (V106M, chain A/B, )
36: VAR_POL_HV1H2_113 (V108I, chain A/B, )
37: VAR_POL_HV1H2_114 (Y115F, chain A/B, )
38: VAR_POL_HV1H2_115 (F116Y, chain A/B, )
39: VAR_POL_HV1H2_116 (V118I, chain A/B, )
40: VAR_POL_HV1H2_117 (P119S, chain A/B, )
41: VAR_POL_HV1H2_118 (I135L, chain A/B, )
42: VAR_POL_HV1H2_119 (I135M, chain A/B, )
43: VAR_POL_HV1H2_120 (I135T, chain A/B, )
44: VAR_POL_HV1H2_121 (E138K, chain A/B, )
45: VAR_POL_HV1H2_122 (Q145M, chain A/B, )
46: VAR_POL_HV1H2_123 (Q151M, chain A/B, )
47: VAR_POL_HV1H2_124 (S156A, chain A/B, )
48: VAR_POL_HV1H2_125 (P157S, chain A/B, )
49: VAR_POL_HV1H2_126 (Q161L, chain A/B, )
50: VAR_POL_HV1H2_127 (V179D, chain A/B, )
51: VAR_POL_HV1H2_128 (Y181C, chain A/B, )
52: VAR_POL_HV1H2_129 (M184I, chain A/B, )
53: VAR_POL_HV1H2_130 (M184T, chain A/B, )
54: VAR_POL_HV1H2_131 (M184V, chain A/B, )
55: VAR_POL_HV1H2_132 (Y188C, chain A/B, )
56: VAR_POL_HV1H2_133 (Y188H, chain A/B, )
57: VAR_POL_HV1H2_134 (Y188L, chain A/B, )
58: VAR_POL_HV1H2_135 (V189I, chain A/B, )
59: VAR_POL_HV1H2_136 (G190A, chain A/B, )
60: VAR_POL_HV1H2_137 (G190C, chain A/B, )
61: VAR_POL_HV1H2_138 (G190E, chain A/B, )
62: VAR_POL_HV1H2_139 (G190Q, chain A/B, )
63: VAR_POL_HV1H2_140 (G190S, chain A/B, )
64: VAR_POL_HV1H2_141 (G190T, chain A/B, )
65: VAR_POL_HV1H2_142 (G190V, chain A/B, )
66: VAR_POL_HV1H2_143 (H208Y, chain A/B, )
67: VAR_POL_HV1H2_144 (L210W, chain A/B, )
68: VAR_POL_HV1H2_145 (R211K, chain A/B, )
69: VAR_POL_HV1H2_146 (L214F, chain A/B, )
70: VAR_POL_HV1H2_147 (T215F, chain A/B, )
71: VAR_POL_HV1H2_148 (T215Y, chain A/B, )
72: VAR_POL_HV1H2_149 (K219E, chain A, )
73: VAR_POL_HV1H2_150 (K219Q, chain A, )
74: VAR_POL_HV1H2_151 (K219R, chain A, )
75: VAR_POL_HV1H2_152 (P225H, chain A, )
76: VAR_POL_HV1H2_153 (P236L, chain A/B, )
77: VAR_POL_HV1H2_154 (K238T, chain A/B, )
78: VAR_POL_HV1H2_155 (L283I, chain A/B, )
79: VAR_POL_HV1H2_156 (Y318F, chain A/B, )
80: VAR_POL_HV1H2_157 (G333D, chain A/B, )
81: VAR_POL_HV1H2_158 (G333E, chain A/B, )
82: VAR_POL_HV1H2_159 (T386I, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_POL_HV1H2_069
*
M
628
L
POL_HV1H2
---
---
A/B
M
41
L
02
UniProt
VAR_POL_HV1H2_070
*
E
631
A
POL_HV1H2
---
---
A/B
E
44
A
03
UniProt
VAR_POL_HV1H2_071
*
E
631
D
POL_HV1H2
---
---
A/B
E
44
D
04
UniProt
VAR_POL_HV1H2_072
*
P
639
R
POL_HV1H2
---
---
A/B
P
52
R
05
UniProt
VAR_POL_HV1H2_073
*
N
641
D
POL_HV1H2
---
---
A/B
N
54
D
06
UniProt
VAR_POL_HV1H2_074
*
A
649
V
POL_HV1H2
---
---
A/B
A
62
V
07
UniProt
VAR_POL_HV1H2_084
*
T
656
A
POL_HV1H2
---
---
A/B
T
69
A
08
UniProt
VAR_POL_HV1H2_085
*
T
656
D
POL_HV1H2
---
---
A/B
T
69
D
09
UniProt
VAR_POL_HV1H2_086
*
T
656
G
POL_HV1H2
---
---
A/B
T
69
G
10
UniProt
VAR_POL_HV1H2_087
*
T
656
N
POL_HV1H2
---
---
A/B
T
69
N
11
UniProt
VAR_POL_HV1H2_088
*
K
657
E
POL_HV1H2
---
---
A/B
K
70
E
12
UniProt
VAR_POL_HV1H2_089
*
K
657
R
POL_HV1H2
---
---
A/B
K
70
R
13
UniProt
VAR_POL_HV1H2_090
*
K
657
S
POL_HV1H2
---
---
A/B
K
70
S
14
UniProt
VAR_POL_HV1H2_091
*
L
661
I
POL_HV1H2
---
---
A/B
L
74
I
15
UniProt
VAR_POL_HV1H2_092
*
L
661
V
POL_HV1H2
---
---
A/B
L
74
V
16
UniProt
VAR_POL_HV1H2_093
*
V
662
I
POL_HV1H2
---
---
A/B
V
75
I
17
UniProt
VAR_POL_HV1H2_094
*
V
662
L
POL_HV1H2
---
---
A/B
V
75
L
18
UniProt
VAR_POL_HV1H2_095
*
V
662
M
POL_HV1H2
---
---
A/B
V
75
M
19
UniProt
VAR_POL_HV1H2_096
*
V
662
T
POL_HV1H2
---
---
A/B
V
75
T
20
UniProt
VAR_POL_HV1H2_097
*
F
664
L
POL_HV1H2
---
---
A/B
F
77
L
21
UniProt
VAR_POL_HV1H2_098
*
W
675
G
POL_HV1H2
---
---
A/B
W
88
G
22
UniProt
VAR_POL_HV1H2_099
*
W
675
S
POL_HV1H2
---
---
A/B
W
88
S
23
UniProt
VAR_POL_HV1H2_100
*
E
676
G
POL_HV1H2
---
---
A/B
E
89
G
24
UniProt
VAR_POL_HV1H2_101
*
E
676
K
POL_HV1H2
---
---
A/B
E
89
K
25
UniProt
VAR_POL_HV1H2_102
*
L
679
I
POL_HV1H2
---
---
A/B
L
92
I
26
UniProt
VAR_POL_HV1H2_103
*
L
687
I
POL_HV1H2
---
---
A/B
L
100
I
27
UniProt
VAR_POL_HV1H2_104
*
K
688
E
POL_HV1H2
---
---
A/B
K
101
E
28
UniProt
VAR_POL_HV1H2_105
*
K
688
P
POL_HV1H2
---
---
A/B
K
101
P
29
UniProt
VAR_POL_HV1H2_106
*
K
688
Q
POL_HV1H2
---
---
A/B
K
101
Q
30
UniProt
VAR_POL_HV1H2_107
*
K
690
E
POL_HV1H2
---
---
A/B
N
103
E
31
UniProt
VAR_POL_HV1H2_108
*
K
690
N
POL_HV1H2
---
---
A/B
N
103
N
32
UniProt
VAR_POL_HV1H2_109
*
K
690
R
POL_HV1H2
---
---
A/B
N
103
R
33
UniProt
VAR_POL_HV1H2_110
*
V
693
A
POL_HV1H2
---
---
A/B
V
106
A
34
UniProt
VAR_POL_HV1H2_111
*
V
693
I
POL_HV1H2
---
---
A/B
V
106
I
35
UniProt
VAR_POL_HV1H2_112
*
V
693
M
POL_HV1H2
---
---
A/B
V
106
M
36
UniProt
VAR_POL_HV1H2_113
*
V
695
I
POL_HV1H2
---
---
A/B
V
108
I
37
UniProt
VAR_POL_HV1H2_114
*
Y
702
F
POL_HV1H2
---
---
A/B
Y
115
F
38
UniProt
VAR_POL_HV1H2_115
*
F
703
Y
POL_HV1H2
---
---
A/B
F
116
Y
39
UniProt
VAR_POL_HV1H2_116
*
V
705
I
POL_HV1H2
---
---
A/B
V
118
I
40
UniProt
VAR_POL_HV1H2_117
*
P
706
S
POL_HV1H2
---
---
A/B
P
119
S
41
UniProt
VAR_POL_HV1H2_118
*
I
722
L
POL_HV1H2
---
---
A/B
I
135
L
42
UniProt
VAR_POL_HV1H2_119
*
I
722
M
POL_HV1H2
---
---
A/B
I
135
M
43
UniProt
VAR_POL_HV1H2_120
*
I
722
T
POL_HV1H2
---
---
A/B
I
135
T
44
UniProt
VAR_POL_HV1H2_121
*
E
725
K
POL_HV1H2
---
---
A/B
E
138
K
45
UniProt
VAR_POL_HV1H2_122
*
Q
732
M
POL_HV1H2
---
---
A/B
Q
145
M
46
UniProt
VAR_POL_HV1H2_123
*
Q
738
M
POL_HV1H2
---
---
A/B
Q
151
M
47
UniProt
VAR_POL_HV1H2_124
*
S
743
A
POL_HV1H2
---
---
A/B
S
156
A
48
UniProt
VAR_POL_HV1H2_125
*
P
744
S
POL_HV1H2
---
---
A/B
P
157
S
49
UniProt
VAR_POL_HV1H2_126
*
Q
748
L
POL_HV1H2
---
---
A/B
Q
161
L
50
UniProt
VAR_POL_HV1H2_127
*
V
766
D
POL_HV1H2
---
---
A/B
V
179
D
51
UniProt
VAR_POL_HV1H2_128
*
Y
768
C
POL_HV1H2
---
---
A/B
Y
181
C
52
UniProt
VAR_POL_HV1H2_129
*
M
771
I
POL_HV1H2
---
---
A/B
M
184
I
53
UniProt
VAR_POL_HV1H2_130
*
M
771
T
POL_HV1H2
---
---
A/B
M
184
T
54
UniProt
VAR_POL_HV1H2_131
*
M
771
V
POL_HV1H2
---
---
A/B
M
184
V
55
UniProt
VAR_POL_HV1H2_132
*
Y
775
C
POL_HV1H2
---
---
A/B
Y
188
C
56
UniProt
VAR_POL_HV1H2_133
*
Y
775
H
POL_HV1H2
---
---
A/B
Y
188
H
57
UniProt
VAR_POL_HV1H2_134
*
Y
775
L
POL_HV1H2
---
---
A/B
Y
188
L
58
UniProt
VAR_POL_HV1H2_135
*
V
776
I
POL_HV1H2
---
---
A/B
V
189
I
59
UniProt
VAR_POL_HV1H2_136
*
G
777
A
POL_HV1H2
---
---
A/B
G
190
A
60
UniProt
VAR_POL_HV1H2_137
*
G
777
C
POL_HV1H2
---
---
A/B
G
190
C
61
UniProt
VAR_POL_HV1H2_138
*
G
777
E
POL_HV1H2
---
---
A/B
G
190
E
62
UniProt
VAR_POL_HV1H2_139
*
G
777
Q
POL_HV1H2
---
---
A/B
G
190
Q
63
UniProt
VAR_POL_HV1H2_140
*
G
777
S
POL_HV1H2
---
---
A/B
G
190
S
64
UniProt
VAR_POL_HV1H2_141
*
G
777
T
POL_HV1H2
---
---
A/B
G
190
T
65
UniProt
VAR_POL_HV1H2_142
*
G
777
V
POL_HV1H2
---
---
A/B
G
190
V
66
UniProt
VAR_POL_HV1H2_143
*
H
795
Y
POL_HV1H2
---
---
A/B
H
208
Y
67
UniProt
VAR_POL_HV1H2_144
*
L
797
W
POL_HV1H2
---
---
A/B
L
210
W
68
UniProt
VAR_POL_HV1H2_145
*
R
798
K
POL_HV1H2
---
---
A/B
R
211
K
69
UniProt
VAR_POL_HV1H2_146
*
L
801
F
POL_HV1H2
---
---
A/B
L
214
F
70
UniProt
VAR_POL_HV1H2_147
*
T
802
F
POL_HV1H2
---
---
A/B
T
215
F
71
UniProt
VAR_POL_HV1H2_148
*
T
802
Y
POL_HV1H2
---
---
A/B
T
215
Y
72
UniProt
VAR_POL_HV1H2_149
*
K
806
E
POL_HV1H2
---
---
A
K
219
E
73
UniProt
VAR_POL_HV1H2_150
*
K
806
Q
POL_HV1H2
---
---
A
K
219
Q
74
UniProt
VAR_POL_HV1H2_151
*
K
806
R
POL_HV1H2
---
---
A
K
219
R
75
UniProt
VAR_POL_HV1H2_152
*
P
812
H
POL_HV1H2
---
---
A
P
225
H
76
UniProt
VAR_POL_HV1H2_153
*
P
823
L
POL_HV1H2
---
---
A/B
P
236
L
77
UniProt
VAR_POL_HV1H2_154
*
K
825
T
POL_HV1H2
---
---
A/B
K
238
T
78
UniProt
VAR_POL_HV1H2_155
*
L
870
I
POL_HV1H2
---
---
A/B
L
283
I
79
UniProt
VAR_POL_HV1H2_156
*
Y
905
F
POL_HV1H2
---
---
A/B
Y
318
F
80
UniProt
VAR_POL_HV1H2_157
*
G
920
D
POL_HV1H2
---
---
A/B
G
333
D
81
UniProt
VAR_POL_HV1H2_158
*
G
920
E
POL_HV1H2
---
---
A/B
G
333
E
82
UniProt
VAR_POL_HV1H2_159
*
T
973
I
POL_HV1H2
---
---
A/B
T
386
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 6)
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1: RT_POL (A:44-234,B:44-234)
2: RNASE_H (A:434-557)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RT_POL
PS50878
Reverse transcriptase (RT) catalytic domain profile.
POL_HV1H2
631-821
4
A:44-234
B:44-234
2
RNASE_H
PS50879
RNase H domain profile.
POL_HV1H2
1021-1144
2
A:434-557
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Exons
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SCOP Domains
(2, 3)
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1a: SCOP_d3lp2a2 (A:430-557)
2a: SCOP_d3lp2a1 (A:0-429)
2b: SCOP_d3lp2b_ (B:)
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Class
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Alpha and beta proteins (a/b)
(23833)
Fold
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Ribonuclease H-like motif
(1424)
Superfamily
:
Ribonuclease H-like
(775)
Family
:
automated matches
(127)
Protein domain
:
automated matches
(127)
Human immunodeficiency virus type 1 [TaxId: 11706]
(19)
1a
d3lp2a2
A:430-557
Class
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Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
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DNA/RNA polymerases
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Family
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Reverse transcriptase
(217)
Protein domain
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HIV-1 reverse transcriptase
(161)
Human immunodeficiency virus type 1 [TaxId: 11676]
(138)
2a
d3lp2a1
A:0-429
2b
d3lp2b_
B:
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Pfam Domains
(4, 7)
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all PFAM domains
1a: PFAM_RNase_H_3lp2A01 (A:435-557)
2a: PFAM_RVT_1_3lp2B01 (B:63-234)
2b: PFAM_RVT_1_3lp2B02 (B:63-234)
3a: PFAM_RVT_connect_3lp2B03 (B:317-419)
3b: PFAM_RVT_connect_3lp2B04 (B:317-419)
4a: PFAM_RVT_thumb_3lp2B05 (B:238-307)
4b: PFAM_RVT_thumb_3lp2B06 (B:238-307)
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RNase_H
(288)
Family
:
RNase_H
(128)
Human immunodeficiency virus type 1 group M subtype B (isolate HXB2) (HIV-1)
(58)
1a
RNase_H-3lp2A01
A:435-557
Clan
:
RdRP
(210)
Family
:
RVT_1
(95)
Human immunodeficiency virus type 1 group M subtype B (isolate HXB2) (HIV-1)
(57)
2a
RVT_1-3lp2B01
B:63-234
2b
RVT_1-3lp2B02
B:63-234
Clan
:
no clan defined [family: RVT_connect]
(84)
Family
:
RVT_connect
(84)
Human immunodeficiency virus type 1 group M subtype B (isolate HXB2) (HIV-1)
(57)
3a
RVT_connect-3lp2B03
B:317-419
3b
RVT_connect-3lp2B04
B:317-419
Clan
:
no clan defined [family: RVT_thumb]
(84)
Family
:
RVT_thumb
(84)
Human immunodeficiency virus type 1 group M subtype B (isolate HXB2) (HIV-1)
(57)
4a
RVT_thumb-3lp2B05
B:238-307
4b
RVT_thumb-3lp2B06
B:238-307
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