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3LL2
Asym. Unit
Info
Asym.Unit (53 KB)
Biol.Unit 1 (47 KB)
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(1)
Title
:
MONOMERIC GRIFFITHSIN IN COMPLEX WITH A HIGH-MANNOSE BRANCHED CARBOHYDRATE
Authors
:
T. Moulaei, A. Wlodawer
Date
:
28 Jan 10 (Deposition) - 06 Oct 10 (Release) - 06 Oct 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
0.97
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Lectin, Sugar-Binding, Anti-Hiv, High Mannose, Man9, Gp120, Gp41, Jacalin-Related, Mannose-Binding, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
T. Moulaei, S. R. Shenoy, B. Giomarelli, C. Thomas, J. B. Mcmahon, Z. Dauter, B. R. O'Keefe, A. Wlodawer
Monomerization Of Viral Entry Inhibitor Griffithsin Elucidates The Relationship Between Multivalent Binding To Carbohydrates And Anti-Hiv Activity.
Structure V. 18 1104 2010
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Hetero Components
(3, 16)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
2
MAN
8
Ligand/Ion
ALPHA-D-MANNOSE
3
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:27 , TYR A:68 , MAN A:123 , MAN A:127 , HOH A:207 , HOH A:222
BINDING SITE FOR RESIDUE MAN A 122
02
AC2
SOFTWARE
ASP A:109 , MAN A:122 , MAN A:124 , MAN A:125 , HOH A:226 , HOH A:242
BINDING SITE FOR RESIDUE MAN A 123
03
AC3
SOFTWARE
MAN A:123 , EDO A:137 , HOH A:166 , HOH A:170 , HOH A:218 , HOH A:243 , HOH A:273
BINDING SITE FOR RESIDUE MAN A 124
04
AC4
SOFTWARE
GLY A:26 , SER A:27 , TYR A:28 , ASP A:30 , GLY A:43 , GLY A:44 , ASP A:109 , MAN A:123 , MAN A:126 , EDO A:137 , HOH A:170
BINDING SITE FOR RESIDUE MAN A 125
05
AC5
SOFTWARE
GLY A:11 , GLY A:12 , ASN A:45 , GLY A:108 , ASP A:109 , TYR A:110 , ASP A:112 , MAN A:125 , EDO A:133 , EDO A:135 , HOH A:196 , HOH A:232
BINDING SITE FOR RESIDUE MAN A 126
06
AC6
SOFTWARE
ASP A:67 , GLY A:87 , SER A:88 , GLY A:89 , MAN A:122 , MAN A:128 , EDO A:135 , HOH A:145 , HOH A:261
BINDING SITE FOR RESIDUE MAN A 127
07
AC7
SOFTWARE
SER A:42 , ASP A:67 , MAN A:127 , MAN A:129 , HOH A:145
BINDING SITE FOR RESIDUE MAN A 128
08
AC8
SOFTWARE
GLY A:66 , ASP A:67 , TYR A:68 , ASP A:70 , GLY A:90 , MAN A:128 , HOH A:229 , HOH A:282 , HOH A:286
BINDING SITE FOR RESIDUE MAN A 129
09
AC9
SOFTWARE
PHE A:7 , GLY A:8 , SER A:65 , GLY A:66 , HOH A:287
BINDING SITE FOR RESIDUE EDO A 130
10
BC1
SOFTWARE
VAL A:37 , THR A:62 , SER A:73 , PHE A:74 , HOH A:220 , HOH A:224 , HOH A:238 , HOH A:276
BINDING SITE FOR RESIDUE EDO A 131
11
BC2
SOFTWARE
ARG A:5 , SER A:16 , ASN A:93 , THR A:94 , PEG A:136 , HOH A:194 , HOH A:280
BINDING SITE FOR RESIDUE EDO A 132
12
BC3
SOFTWARE
SER A:25 , GLY A:26 , GLY A:86 , MAN A:126 , EDO A:135 , HOH A:195
BINDING SITE FOR RESIDUE EDO A 133
13
BC4
SOFTWARE
LYS A:99 , GLN A:102 , ASN A:104 , TYR A:117 , HOH A:141
BINDING SITE FOR RESIDUE EDO A 134
14
BC5
SOFTWARE
GLY A:11 , ASP A:67 , MAN A:126 , MAN A:127 , EDO A:133 , HOH A:182 , HOH A:196 , HOH A:230
BINDING SITE FOR RESIDUE EDO A 135
15
BC6
SOFTWARE
SER A:16 , GLY A:16A , SER A:16B , ILE A:34 , VAL A:37 , HIS A:39 , ALA A:92 , ASN A:93 , THR A:94 , EDO A:132
BINDING SITE FOR RESIDUE PEG A 136
16
BC7
SOFTWARE
ASP A:109 , MAN A:124 , MAN A:125 , HOH A:243 , HOH A:273 , HOH A:283
BINDING SITE FOR RESIDUE EDO A 137
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: JACALIN_LECTIN (A:1-120)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
JACALIN_LECTIN
PS51752
Jacalin-type lectin domain profile.
GRFIN_GRISQ
1-120
1
A:1-120
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Jacalin_3ll2A01 (A:13-120)
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Clans
(
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(
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Organisms
(
)
(
)
Clan
:
no clan defined [family: Jacalin]
(35)
Family
:
Jacalin
(35)
Griffithsia sp. (strain Q66D336) (Red alga)
(6)
1a
Jacalin-3ll2A01
A:13-120
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Chain A
Asymmetric Unit 1
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