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3L3V
Asym. Unit
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Asym.Unit (54 KB)
Biol.Unit 1 (49 KB)
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(1)
Title
:
STRUCTURE OF HIV-1 INTEGRASE CORE DOMAIN IN COMPLEX WITH SUCROSE
Authors
:
J. Wielens, D. K. Chalmers, M. J. Scanlon, M. W. Parker
Date
:
18 Dec 09 (Deposition) - 31 Mar 10 (Release) - 12 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Dna Integration, Aids, Integrase, Endonuclease, Polynucleotidyl Transferase, Dna Binding, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Wielens, S. J. Headey, D. Jeevarajah, D. I. Rhodes, J. Deadman, D. K. Chalmers, M. J. Scanlon, M. W. Parker
Crystal Structure Of The Hiv-1 Integrase Core Domain In Complex With Sucrose Reveals Details Of An Allosteric Inhibitory Binding Site
Febs Lett. V. 584 1455 2010
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
3a: SUCROSE (SUCa)
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Label:
No.
Name
Count
Type
Full Name
1
CD
4
Ligand/Ion
CADMIUM ION
2
SO4
2
Ligand/Ion
SULFATE ION
3
SUC
1
Ligand/Ion
SUCROSE
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:14 , CYS A:65 , HIS A:67 , GLU A:92 , CD A:1002 , ASP B:131
BINDING SITE FOR RESIDUE CD A 1001
2
AC2
SOFTWARE
HOH A:2 , CYS A:65 , GLU A:92 , ASP A:116 , HOH A:217 , CD A:1001 , ASP B:131
BINDING SITE FOR RESIDUE CD A 1002
3
AC3
SOFTWARE
HOH A:5 , GLU A:69 , LYS A:71 , ARG A:166 , GLU A:170 , HIS A:171 , LEU A:172 , ARG A:187 , ILE A:191
BINDING SITE FOR RESIDUE SO4 A 751
4
AC4
SOFTWARE
HOH A:11 , HOH A:25 , HOH A:29 , GLU A:87 , VAL A:88 , GLU A:96 , TYR A:99 , LYS A:103 , LYS A:173 , HOH A:231 , GLU B:87 , VAL B:88 , GLU B:96 , TYR B:99 , LYS B:103 , LYS B:173 , HOH B:214 , HOH B:218 , HOH B:228
BINDING SITE FOR RESIDUE SUC A 1
5
AC5
SOFTWARE
HOH B:3 , HOH B:31 , CYS B:65 , GLU B:92 , ASP B:116 , HOH B:224 , CD B:1004
BINDING SITE FOR RESIDUE CD B 1003
6
AC6
SOFTWARE
HOH B:4 , CYS B:65 , HIS B:67 , GLU B:92 , HOH B:224 , CD B:1003
BINDING SITE FOR RESIDUE CD B 1004
7
AC7
SOFTWARE
GLU B:69 , LYS B:71 , ARG B:166 , HIS B:171 , LEU B:172 , HOH B:227
BINDING SITE FOR RESIDUE SO4 B 752
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3l3va_ (A:)
1b: SCOP_d3l3vb_ (B:)
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(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Ribonuclease H-like
(775)
Family
:
Retroviral integrase, catalytic domain
(152)
Protein domain
:
Retroviral integrase, catalytic domain
(62)
Human immunodeficiency virus type 1 [TaxId: 11676]
(38)
1a
d3l3va_
A:
1b
d3l3vb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_rve_3l3vB01 (B:57-162)
1b: PFAM_rve_3l3vB02 (B:57-162)
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)
Clan
:
RNase_H
(288)
Family
:
rve
(46)
Human immunodeficiency virus type 1 group M subtype B (isolate NY5) (HIV-1)
(5)
1a
rve-3l3vB01
B:57-162
1b
rve-3l3vB02
B:57-162
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Asymmetric Unit 1
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Asym.Unit (54 KB)
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