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3L2C
Asym. Unit
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Asym.Unit (34 KB)
Biol.Unit 1 (29 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF FOXO4 BOUND TO DNA
Authors
:
E. Boura, J. Silhan, M. Sulc, J. Brynda, V. Obsilova, T. Obsil
Date
:
15 Dec 09 (Deposition) - 29 Dec 09 (Release) - 22 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.87
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Forkhead, Forkhead Box, Winged Helix, Transcription-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Boura, L. Rezabkova, J. Brynda, V. Obsilova, T. Obsil
Structure Of The Human Foxo4-Dbd-Dna Complex At 1. 9 A Resolution Reveals New Details Of Foxo Binding To The Dna
Acta Crystallogr. , Sect. D V. 66 1351 2010
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
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No.
Name
Count
Type
Full Name
1
MG
2
Ligand/Ion
MAGNESIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:154 , SER A:155 , HIS A:157 , PHE A:160 , HOH C:60
BINDING SITE FOR RESIDUE MG A 1
2
AC2
SOFTWARE
DT C:35 , HOH C:70 , HOH C:71 , HOH C:72 , HOH C:73 , HOH C:74
BINDING SITE FOR RESIDUE MG C 2
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
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1: FORK_HEAD_3 (A:97-177)
2: FORK_HEAD_2 (A:146-152)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FORK_HEAD_3
PS50039
Fork head domain profile.
FOXO4_HUMAN
101-195
1
A:97-177
2
FORK_HEAD_2
PS00658
Fork head domain signature 2.
FOXO4_HUMAN
150-156
1
A:146-152
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Exons
(2, 2)
Info
All Exons
Exon 1.1a (A:93-147)
Exon 1.3c (A:148-177)
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1: Boundary -/1.1a
2: Boundary 1.1a/1.3c
3: Boundary 1.3c/1.4c
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000374259
1a
ENSE00001892186
X:70316047-70316831
785
FOXO4_HUMAN
1-151
151
1
A:93-147
55
1.3c
ENST00000374259
3c
ENSE00001321000
X:70320534-70321590
1057
FOXO4_HUMAN
152-504
353
1
A:148-177
30
1.4c
ENST00000374259
4c
ENSE00001462943
X:70321927-70323385
1459
FOXO4_HUMAN
504-505
2
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3l2ca_ (A:)
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Protein Domains
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
Forkhead DNA-binding domain
(17)
Protein domain
:
Afx (Foxo4)
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d3l2ca_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Fork_head_3l2cA01 (A:93-177)
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Clan
:
no clan defined [family: Fork_head]
(7)
Family
:
Fork_head
(7)
Homo sapiens (Human)
(6)
1a
Fork_head-3l2cA01
A:93-177
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