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3L10
Asym. Unit
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Asym.Unit (57 KB)
Biol.Unit 1 (53 KB)
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(1)
Title
:
STRUCTURE OF SPLIT MONOUBIQUITINATED PCNA WITH UBIQUITIN IN POSITION ONE
Authors
:
B. D. Freudenthal, L. Gakhar, S. Ramaswamy, M. T Washington
Date
:
10 Dec 09 (Deposition) - 23 Mar 10 (Release) - 21 Apr 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Replication, Dna Damage, Dna Repair, Dna Replication, Dna- Binding, Isopeptide Bond, Nucleus, Ubl Conjugation
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
B. D. Freudenthal, L. Gakhar, S. Ramaswamy, M. T. Washington
Structure Of Monoubiquitinated Pcna And Implications For Translesion Synthesis And Dna Polymerase Exchange.
Nat. Struct. Mol. Biol. V. 17 479 2010
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(4, 13)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_2 (B:1-90,B:1-90,B:1-75|B:80-93|B:97-...)
2: UBIQUITIN_1 (B:27-52,B:27-52,B:27-52|B:86-86|B:...)
3: PCNA_1 (A:34-57)
4: PCNA_2 (A:61-79)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_2
PS50053
Ubiquitin domain profile.
RL40A_YEAST
1-76
1
B:1-90
RL40B_YEAST
1-76
1
B:1-90
UBI4P_YEAST
1-76
77-152
153-228
229-304
305-380
5
B:1-75
B:80-93
B:97-131
B:133-158
B:162-169
2
UBIQUITIN_1
PS00299
Ubiquitin domain signature.
RL40A_YEAST
27-52
1
B:27-52
RL40B_YEAST
27-52
1
B:27-52
UBI4P_YEAST
27-52
103-128
179-204
255-280
331-356
5
B:27-52
B:86-86
B:110-128
B:133-141
B:166-166
3
PCNA_1
PS01251
Proliferating cell nuclear antigen signature 1.
PCNA_YEAST
34-57
1
A:34-57
4
PCNA_2
PS00293
Proliferating cell nuclear antigen signature 2.
PCNA_YEAST
61-79
1
A:61-79
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Exons
(2, 2)
Info
All Exons
Exon 1.1 (A:1-163)
Exon 2.1 (B:1-169 (gaps))
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
3: Boundary -/2.1
4: Boundary 2.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YBR088C
1
YBR088C.1
II:425760-424984
777
PCNA_YEAST
1-258
258
1
A:1-163
163
2.1
YLL039C
1
YLL039C.1
XII:65206-64061
1146
UBI4P_YEAST
1-381
381
1
B:1-169 (gaps)
365
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3l10a1 (A:1-126)
1b: SCOP_d3l10a2 (A:127-163)
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Protein Domains
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)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNA clamp
(88)
Superfamily
:
DNA clamp
(88)
Family
:
DNA polymerase processivity factor
(40)
Protein domain
:
automated matches
(10)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(4)
1a
d3l10a1
A:1-126
1b
d3l10a2
A:127-163
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CATH Domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_PCNA_N_3l10A01 (A:1-126)
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Clans
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Clan
:
DNA_clamp
(33)
Family
:
PCNA_N
(25)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(8)
1a
PCNA_N-3l10A01
A:1-126
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Asymmetric Unit 1
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