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3KPE
Biol. Unit 1
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Biol.Unit 1 (48 KB)
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(1)
Title
:
SOLUTION STRUCTURE OF THE RESPIRATORY SYNCYTIAL VIRUS (RSV)SIX-HELIX BUNDLE COMPLEXED WITH TMC353121, A SMALL-MOLEUCULE INHIBITOR OF RSV
Authors
:
D. Roymans, H. De Bondt, E. Arnoult, M. D. Cummings, H. Van Vlijmen, K.
Date
:
16 Nov 09 (Deposition) - 22 Dec 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.47
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
Peptide-Small-Molecule Complex, Alpha Helix, Coiled-Coil, Envelope Protein, Fusion Protein, Glycoprotein, Host Cell Membrane, Host Membrane, Lipoprotein, Membrane, Palmitate, Transmembrane, Virion, Viral Protein
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Reference
:
D. Roymans, H. L. De Bondt, E. Arnoult, P. Geluykens, T. Gevers, M. Van Ginderen, N. Verheyen, H. Kim, R. Willebrords, J. F. Bonfanti, W. Bruinzeel, M. D. Cummings, H. Van Vlijmen, K. Andries
Binding Of A Potent Small-Molecule Inhibitor Of Six-Helix Bundle Formation Requires Interactions With Both Heptad-Repeats Of The Rsv Fusion Protein.
Proc. Natl. Acad. Sci. Usa V. 107 308 2010
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Hetero Components
(2, 6)
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1a: TETRAETHYLENE GLYCOL (PG4a)
2a: 2-[[6-[[[2-(3-HYDROXYPROPYL)-5-MET... (TM3a)
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No.
Name
Count
Type
Full Name
1
PG4
3
Ligand/Ion
TETRAETHYLENE GLYCOL
2
TM3
3
Ligand/Ion
2-[[6-[[[2-(3-HYDROXYPROPYL)-5-METHYLPHENYL]AMINO]METHYL]-2-[[3-(4-MORPHOLINYL)PROPYL]AMINO]-1H-BENZIMIDAZOL-1-YL]METHYL]-6-METHYL-3-PYRIDINOL
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Sites
(2, 2)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Description
1
AC1
SOFTWARE
LYS A:196 , TYR A:198 , ASP A:200 , LYS A:201 , GLN A:202 , PG4 A:210 , HOH A:211 , HOH B:7 , SER B:485 , ASP B:486 , PHE B:488 , ARG B:507 , GLU B:511
BINDING SITE FOR RESIDUE TM3 A 1
2
AC2
SOFTWARE
TM3 A:1 , SER A:173 , TYR A:198 , ASP A:200 , GLN A:202 , LYS B:508
BINDING SITE FOR RESIDUE PG4 A 210
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SCOP Domains
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CATH Domains
(1, 1)
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1a: CATH_3kpeA00 (A:159-207)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.300, no name defined]
(5)
Human respiratory syncytial virus a2. Organism_taxid: 11259. Strain: a2.
(1)
1a
3kpeA00
A:159-207
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Pfam Domains
(1, 2)
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all PFAM domains
1a: PFAM_Fusion_gly_3kpeB01 (B:483-517)
1b: PFAM_Fusion_gly_3kpeB02 (B:483-517)
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Clan
:
no clan defined [family: Fusion_gly]
(9)
Family
:
Fusion_gly
(9)
Human respiratory syncytial virus A (strain A2)
(5)
1a
Fusion_gly-3kpeB01
B:483-517
1b
Fusion_gly-3kpeB02
B:483-517
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