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3KLS
Biol. Unit 2
Info
Asym.Unit (1.2 MB)
Biol.Unit 1 (637 KB)
Biol.Unit 2 (588 KB)
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(1)
Title
:
STRUCTURE OF COMPLEMENT C5 IN COMPLEX WITH SSL7
Authors
:
N. S. Laursen, N. Gordon, S. Hermans, N. Lorenz, N. Jackson, B. Wines, E. J. B. Christensen, M. Jensen, F. Fredslund, M. Bjerre, L. Sottrup-Jen J. D. Fraser, G. R. Andersen
Date
:
09 Nov 09 (Deposition) - 24 Nov 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.60
Chains
:
Asym. Unit : A,B,X,Y
Biol. Unit 1: A,X (1x)
Biol. Unit 2: B,Y (1x)
Keywords
:
Ob-Fold, B-Grasp Domain, Fn3 Domain, Cleavage On Pair Of Basic Residues, Complement Alternate Pathway, Complement Pathway, Cytolysis, Disulfide Bond, Glycoprotein, Immune Response, Inflammatory Response, Innate Immunity, Membrane Attack Complex, Secreted, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
N. S. Laursen, N. Gordon, S. Hermans, N. Lorenz, N. Jackson, B. Wines, E. Spillner, J. B. Christensen, M. Jensen, F. Fredslund, M. Bjerre, L. Sottrup-Jensen, J. D. Fraser, G. R. Andersen
Structural Basis For Inhibition Of Complement C5 By The Ssl Protein From Staphylococcus Aureus
Proc. Natl. Acad. Sci. Usa V. 107 3681 2010
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
1g: CADMIUM ION (CDg)
1h: CADMIUM ION (CDh)
1i: CADMIUM ION (CDi)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CD
-1
Ligand/Ion
CADMIUM ION
2
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC5 (SOFTWARE)
3: AC6 (SOFTWARE)
4: BC1 (SOFTWARE)
5: BC2 (SOFTWARE)
6: BC3 (SOFTWARE)
7: BC4 (SOFTWARE)
8: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:247 , GLU B:247
BINDING SITE FOR RESIDUE CD A 1677
2
AC5
SOFTWARE
ASN B:911 , ILE B:922 , NAG B:2002
BINDING SITE FOR RESIDUE NAG B 2001
3
AC6
SOFTWARE
NAG B:2001
BINDING SITE FOR RESIDUE NAG B 2002
4
BC1
SOFTWARE
ASP B:471 , HIS B:473 , GLU B:480
BINDING SITE FOR RESIDUE CD B 1677
5
BC2
SOFTWARE
ASP B:264 , HIS B:753
BINDING SITE FOR RESIDUE CD B 1678
6
BC3
SOFTWARE
GLU B:339 , GLU B:764
BINDING SITE FOR RESIDUE CD B 1679
7
BC4
SOFTWARE
GLU A:1666 , GLN B:886 , HIS B:894
BINDING SITE FOR RESIDUE CD B 1680
8
BC6
SOFTWARE
ASN B:741
BINDING SITE FOR RESIDUE NAG B 1681
[
close Site info
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SAPs(SNPs)/Variants
(18, 18)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_038735 (V145I, chain B, )
02: VAR_048822 (L354M, chain B, )
03: VAR_023946 (T389I, chain B, )
04: VAR_038736 (R449G, chain B, )
05: VAR_001996 (F518S, chain B, )
06: VAR_014574 (I802I, chain B, )
07: VAR_071067 (R885C, chain B, )
08: VAR_071068 (R885H, chain B, )
09: VAR_038737 (R928Q, chain B, )
10: VAR_038738 (G933V, chain B, )
11: VAR_048823 (D966Y, chain B, )
12: VAR_038739 (I1033T, chain B, )
13: VAR_038740 (D1037N, chain B, )
14: VAR_038741 (Q1043K, chain B, )
15: VAR_014575 (M1053L, chain B, )
16: VAR_014576 (S1310N, chain B, )
17: VAR_048824 (V1365A, chain B, )
18: VAR_014577 (E1437D, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_038735
V
145
I
CO5_HUMAN
Polymorphism
17216529
B
V
145
I
02
UniProt
VAR_048822
L
354
M
CO5_HUMAN
Polymorphism
34552775
B
L
354
M
03
UniProt
VAR_023946
T
389
I
CO5_HUMAN
Polymorphism
---
B
T
389
I
04
UniProt
VAR_038736
R
449
G
CO5_HUMAN
Polymorphism
2230213
B
R
449
G
05
UniProt
VAR_001996
F
518
S
CO5_HUMAN
Polymorphism
---
B
F
518
S
06
UniProt
VAR_014574
V
802
I
CO5_HUMAN
Polymorphism
17611
B
I
802
I
07
UniProt
VAR_071067
R
885
C
CO5_HUMAN
Polymorphism
373359894
B
R
885
C
08
UniProt
VAR_071068
R
885
H
CO5_HUMAN
Polymorphism
56040400
B
R
885
H
09
UniProt
VAR_038737
R
928
Q
CO5_HUMAN
Polymorphism
41309892
B
R
928
Q
10
UniProt
VAR_038738
G
933
V
CO5_HUMAN
Polymorphism
41309902
B
G
933
V
11
UniProt
VAR_048823
D
966
Y
CO5_HUMAN
Polymorphism
2230212
B
D
966
Y
12
UniProt
VAR_038739
I
1033
T
CO5_HUMAN
Polymorphism
41311881
B
I
1033
T
13
UniProt
VAR_038740
D
1037
N
CO5_HUMAN
Polymorphism
41311883
B
D
1037
N
14
UniProt
VAR_038741
Q
1043
K
CO5_HUMAN
Polymorphism
41311887
B
Q
1043
K
15
UniProt
VAR_014575
M
1053
L
CO5_HUMAN
Polymorphism
17609
B
M
1053
L
16
UniProt
VAR_014576
S
1310
N
CO5_HUMAN
Polymorphism
17610
B
S
1310
N
17
UniProt
VAR_048824
V
1365
A
CO5_HUMAN
Polymorphism
16910245
B
V
1365
A
18
UniProt
VAR_014577
E
1437
D
CO5_HUMAN
Polymorphism
17612
B
E
1437
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: ANAPHYLATOXIN_1 (B:698-732)
2: ANAPHYLATOXIN_2 (B:698-732)
3: NTR (B:1532-1532)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ANAPHYLATOXIN_1
PS01177
Anaphylatoxin domain signature.
CO5_HUMAN
698-732
1
-
B:698-732
2
ANAPHYLATOXIN_2
PS01178
Anaphylatoxin domain profile.
CO5_HUMAN
698-732
1
-
B:698-732
3
NTR
PS50189
NTR domain profile.
CO5_HUMAN
1532-1676
1
-
B:1532-1532
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Label:
Sorry, no Info available
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3klsX01 (X:40-51,X:126-230)
1b: CATH_3klsY01 (Y:40-51,Y:126-230)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
[code=3.10.20.120, no name defined]
(91)
Human (Homo sapiens)
(21)
1a
3klsX01
X:40-51,X:126-230
1b
3klsY01
Y:40-51,Y:126-230
[
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Pfam Domains
(7, 13)
Info
all PFAM domains
1a: PFAM_A2M_comp_3klsB01 (B:1051-1302)
1b: PFAM_A2M_comp_3klsB02 (B:1051-1302)
2a: PFAM_A2M_N_3klsB03 (B:125-219)
2b: PFAM_A2M_N_3klsB04 (B:125-219)
3a: PFAM_A2M_3klsB05 (B:772-859)
3b: PFAM_A2M_3klsB06 (B:772-859)
4a: PFAM_NTR_3klsA01 (A:1550-1660)
5a: PFAM_A2M_N_2_3klsB07 (B:467-612)
5b: PFAM_A2M_N_2_3klsB08 (B:467-612)
6a: PFAM_A2M_recep_3klsB09 (B:1419-1509)
6b: PFAM_A2M_recep_3klsB10 (B:1419-1509)
7a: PFAM_ANATO_3klsB11 (B:698-732)
7b: PFAM_ANATO_3klsB12 (B:698-732)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
6_Hairpin
(120)
Family
:
A2M_comp
(16)
Homo sapiens (Human)
(13)
1a
A2M_comp-3klsB01
B:1051-1302
1b
A2M_comp-3klsB02
B:1051-1302
Clan
:
E-set
(290)
Family
:
A2M_N
(14)
Homo sapiens (Human)
(13)
2a
A2M_N-3klsB03
B:125-219
2b
A2M_N-3klsB04
B:125-219
Clan
:
Ig
(577)
Family
:
A2M
(13)
Homo sapiens (Human)
(12)
3a
A2M-3klsB05
B:772-859
3b
A2M-3klsB06
B:772-859
Clan
:
TIMP-like
(15)
Family
:
NTR
(13)
Homo sapiens (Human)
(13)
4a
NTR-3klsA01
A:1550-1660
Clan
:
no clan defined [family: A2M_N_2]
(13)
Family
:
A2M_N_2
(13)
Homo sapiens (Human)
(12)
5a
A2M_N_2-3klsB07
B:467-612
5b
A2M_N_2-3klsB08
B:467-612
Clan
:
no clan defined [family: A2M_recep]
(13)
Family
:
A2M_recep
(13)
Homo sapiens (Human)
(12)
6a
A2M_recep-3klsB09
B:1419-1509
6b
A2M_recep-3klsB10
B:1419-1509
Clan
:
no clan defined [family: ANATO]
(5)
Family
:
ANATO
(5)
Homo sapiens (Human)
(5)
7a
ANATO-3klsB11
B:698-732
7b
ANATO-3klsB12
B:698-732
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