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(-) Description

Title :  STRUCTURE OF COMPLEMENT C5 IN COMPLEX WITH SSL7
 
Authors :  N. S. Laursen, N. Gordon, S. Hermans, N. Lorenz, N. Jackson, B. Wines, E. J. B. Christensen, M. Jensen, F. Fredslund, M. Bjerre, L. Sottrup-Jen J. D. Fraser, G. R. Andersen
Date :  09 Nov 09  (Deposition) - 24 Nov 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.60
Chains :  Asym. Unit :  A,B,X,Y
Biol. Unit 1:  A,X  (1x)
Biol. Unit 2:  B,Y  (1x)
Keywords :  Ob-Fold, B-Grasp Domain, Fn3 Domain, Cleavage On Pair Of Basic Residues, Complement Alternate Pathway, Complement Pathway, Cytolysis, Disulfide Bond, Glycoprotein, Immune Response, Inflammatory Response, Innate Immunity, Membrane Attack Complex, Secreted, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  N. S. Laursen, N. Gordon, S. Hermans, N. Lorenz, N. Jackson, B. Wines, E. Spillner, J. B. Christensen, M. Jensen, F. Fredslund, M. Bjerre, L. Sottrup-Jensen, J. D. Fraser, G. R. Andersen
Structural Basis For Inhibition Of Complement C5 By The Ssl Protein From Staphylococcus Aureus
Proc. Natl. Acad. Sci. Usa V. 107 3681 2010
PubMed-ID: 20133685  |  Reference-DOI: 10.1073/PNAS.0910565107

(-) Compounds

Molecule 1 - COMPLEMENT C5
    ChainsA, B
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsOUTDATED PLASMA POOLS
    SynonymC3 AND PZP-LIKE ALPHA-2-MACROGLOBULIN DOMAIN-CONTAINING PROTEIN 4, COMPLEMENT C5 BETA CHAIN, COMPLEMENT C5 ALPHA CHAIN, C5A ANAPHYLATOXIN, COMPLEMENT C5 ALPHA' CHAIN
    TissueBLOOD
 
Molecule 2 - EXOTOXIN 1
    ChainsX, Y
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    MutationYES
    Organism ScientificSTAPHYLOCOCCUS AUREUS SUBSP. AUREUS
    Organism Taxid282458
    StrainMRSA252
    SynonymSSL7

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABXY
Biological Unit 1 (1x)A X 
Biological Unit 2 (1x) B Y

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 15)

Asymmetric Unit (2, 15)
No.NameCountTypeFull Name
1CD9Ligand/IonCADMIUM ION
2NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION
2NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION
2NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:247 , GLU B:247BINDING SITE FOR RESIDUE CD A 1677
02AC2SOFTWAREASN A:911 , ILE A:922 , NAG A:2002BINDING SITE FOR RESIDUE NAG A 2001
03AC3SOFTWARENAG A:2001BINDING SITE FOR RESIDUE NAG A 2002
04AC4SOFTWAREASP A:471 , HIS A:473 , GLU A:480BINDING SITE FOR RESIDUE CD A 1678
05AC5SOFTWAREASN B:911 , ILE B:922 , NAG B:2002BINDING SITE FOR RESIDUE NAG B 2001
06AC6SOFTWARENAG B:2001BINDING SITE FOR RESIDUE NAG B 2002
07AC7SOFTWAREASP A:264 , HIS A:753BINDING SITE FOR RESIDUE CD A 1679
08AC8SOFTWAREGLU A:339 , GLU A:764BINDING SITE FOR RESIDUE CD A 1680
09AC9SOFTWAREGLN A:886 , HIS A:894 , GLU A:1589BINDING SITE FOR RESIDUE CD A 1681
10BC1SOFTWAREASP B:471 , HIS B:473 , GLU B:480BINDING SITE FOR RESIDUE CD B 1677
11BC2SOFTWAREASP B:264 , HIS B:753BINDING SITE FOR RESIDUE CD B 1678
12BC3SOFTWAREGLU B:339 , GLU B:764BINDING SITE FOR RESIDUE CD B 1679
13BC4SOFTWAREGLU A:1666 , GLN B:886 , HIS B:894BINDING SITE FOR RESIDUE CD B 1680
14BC5SOFTWAREASN A:741BINDING SITE FOR RESIDUE NAG A 1682
15BC6SOFTWAREASN B:741BINDING SITE FOR RESIDUE NAG B 1681

(-) SS Bonds  (25, 25)

Asymmetric Unit
No.Residues
1A:567 -A:810
2A:634 -A:669
3A:698 -A:724
4A:699 -A:731
5A:711 -A:732
6A:856 -A:883
7A:866 -A:1527
8A:1101 -A:1159
9A:1375 -A:1505
10A:1405 -A:1474
11A:1520 -A:1525
12A:1532 -A:1606
13A:1553 -A:1676
14A:1654 -A:1657
15B:567 -B:810
16B:634 -B:669
17B:698 -B:724
18B:699 -B:731
19B:711 -B:732
20B:856 -B:883
21B:866 -B:1527
22B:1101 -B:1159
23B:1375 -B:1505
24B:1405 -B:1474
25B:1520 -B:1525

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Asn A:1221 -Pro A:1222
2Lys X:125 -Asn X:126
3Asn B:1221 -Pro B:1222
4Lys Y:125 -Asn Y:126

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (18, 36)

Asymmetric Unit (18, 36)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_038735V145ICO5_HUMANPolymorphism17216529A/BV145I
02UniProtVAR_048822L354MCO5_HUMANPolymorphism34552775A/BL354M
03UniProtVAR_023946T389ICO5_HUMANPolymorphism  ---A/BT389I
04UniProtVAR_038736R449GCO5_HUMANPolymorphism2230213A/BR449G
05UniProtVAR_001996F518SCO5_HUMANPolymorphism  ---A/BF518S
06UniProtVAR_014574V802ICO5_HUMANPolymorphism17611A/BI802I
07UniProtVAR_071067R885CCO5_HUMANPolymorphism373359894A/BR885C
08UniProtVAR_071068R885HCO5_HUMANPolymorphism56040400A/BR885H
09UniProtVAR_038737R928QCO5_HUMANPolymorphism41309892A/BR928Q
10UniProtVAR_038738G933VCO5_HUMANPolymorphism41309902A/BG933V
11UniProtVAR_048823D966YCO5_HUMANPolymorphism2230212A/BD966Y
12UniProtVAR_038739I1033TCO5_HUMANPolymorphism41311881A/BI1033T
13UniProtVAR_038740D1037NCO5_HUMANPolymorphism41311883A/BD1037N
14UniProtVAR_038741Q1043KCO5_HUMANPolymorphism41311887A/BQ1043K
15UniProtVAR_014575M1053LCO5_HUMANPolymorphism17609A/BM1053L
16UniProtVAR_014576S1310NCO5_HUMANPolymorphism17610A/BS1310N
17UniProtVAR_048824V1365ACO5_HUMANPolymorphism16910245A/BV1365A
18UniProtVAR_014577E1437DCO5_HUMANPolymorphism17612A/BE1437D

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (18, 18)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_038735V145ICO5_HUMANPolymorphism17216529AV145I
02UniProtVAR_048822L354MCO5_HUMANPolymorphism34552775AL354M
03UniProtVAR_023946T389ICO5_HUMANPolymorphism  ---AT389I
04UniProtVAR_038736R449GCO5_HUMANPolymorphism2230213AR449G
05UniProtVAR_001996F518SCO5_HUMANPolymorphism  ---AF518S
06UniProtVAR_014574V802ICO5_HUMANPolymorphism17611AI802I
07UniProtVAR_071067R885CCO5_HUMANPolymorphism373359894AR885C
08UniProtVAR_071068R885HCO5_HUMANPolymorphism56040400AR885H
09UniProtVAR_038737R928QCO5_HUMANPolymorphism41309892AR928Q
10UniProtVAR_038738G933VCO5_HUMANPolymorphism41309902AG933V
11UniProtVAR_048823D966YCO5_HUMANPolymorphism2230212AD966Y
12UniProtVAR_038739I1033TCO5_HUMANPolymorphism41311881AI1033T
13UniProtVAR_038740D1037NCO5_HUMANPolymorphism41311883AD1037N
14UniProtVAR_038741Q1043KCO5_HUMANPolymorphism41311887AQ1043K
15UniProtVAR_014575M1053LCO5_HUMANPolymorphism17609AM1053L
16UniProtVAR_014576S1310NCO5_HUMANPolymorphism17610AS1310N
17UniProtVAR_048824V1365ACO5_HUMANPolymorphism16910245AV1365A
18UniProtVAR_014577E1437DCO5_HUMANPolymorphism17612AE1437D

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (18, 18)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_038735V145ICO5_HUMANPolymorphism17216529BV145I
02UniProtVAR_048822L354MCO5_HUMANPolymorphism34552775BL354M
03UniProtVAR_023946T389ICO5_HUMANPolymorphism  ---BT389I
04UniProtVAR_038736R449GCO5_HUMANPolymorphism2230213BR449G
05UniProtVAR_001996F518SCO5_HUMANPolymorphism  ---BF518S
06UniProtVAR_014574V802ICO5_HUMANPolymorphism17611BI802I
07UniProtVAR_071067R885CCO5_HUMANPolymorphism373359894BR885C
08UniProtVAR_071068R885HCO5_HUMANPolymorphism56040400BR885H
09UniProtVAR_038737R928QCO5_HUMANPolymorphism41309892BR928Q
10UniProtVAR_038738G933VCO5_HUMANPolymorphism41309902BG933V
11UniProtVAR_048823D966YCO5_HUMANPolymorphism2230212BD966Y
12UniProtVAR_038739I1033TCO5_HUMANPolymorphism41311881BI1033T
13UniProtVAR_038740D1037NCO5_HUMANPolymorphism41311883BD1037N
14UniProtVAR_038741Q1043KCO5_HUMANPolymorphism41311887BQ1043K
15UniProtVAR_014575M1053LCO5_HUMANPolymorphism17609BM1053L
16UniProtVAR_014576S1310NCO5_HUMANPolymorphism17610BS1310N
17UniProtVAR_048824V1365ACO5_HUMANPolymorphism16910245BV1365A
18UniProtVAR_014577E1437DCO5_HUMANPolymorphism17612BE1437D

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (3, 4)

Asymmetric Unit (3, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ANAPHYLATOXIN_1PS01177 Anaphylatoxin domain signature.CO5_HUMAN698-732
 
  2A:698-732
B:698-732
2ANAPHYLATOXIN_2PS01178 Anaphylatoxin domain profile.CO5_HUMAN698-732
 
  2A:698-732
B:698-732
3NTRPS50189 NTR domain profile.CO5_HUMAN1532-1676
 
  2A:1532-1676
B:1532-1532
Biological Unit 1 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ANAPHYLATOXIN_1PS01177 Anaphylatoxin domain signature.CO5_HUMAN698-732
 
  1A:698-732
-
2ANAPHYLATOXIN_2PS01178 Anaphylatoxin domain profile.CO5_HUMAN698-732
 
  1A:698-732
-
3NTRPS50189 NTR domain profile.CO5_HUMAN1532-1676
 
  1A:1532-1676
-
Biological Unit 2 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ANAPHYLATOXIN_1PS01177 Anaphylatoxin domain signature.CO5_HUMAN698-732
 
  1-
B:698-732
2ANAPHYLATOXIN_2PS01178 Anaphylatoxin domain profile.CO5_HUMAN698-732
 
  1-
B:698-732
3NTRPS50189 NTR domain profile.CO5_HUMAN1532-1676
 
  1-
B:1532-1532

(-) Exons   (41, 79)

Asymmetric Unit (41, 79)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2ENST000002236422ENSE00000806456chr9:123812554-12381246095CO5_HUMAN1-22222A:22-22
B:22-22
1
1
1.3ENST000002236423ENSE00000724393chr9:123808661-123808469193CO5_HUMAN22-86652A:22-86
B:22-86
65
65
1.4ENST000002236424ENSE00000724389chr9:123805444-123805282163CO5_HUMAN87-141552A:87-141
B:87-141
55
55
1.5ENST000002236425ENSE00000724383chr9:123800229-12380015971CO5_HUMAN141-164242A:141-164
B:141-164
24
24
1.6aENST000002236426aENSE00000724378chr9:123797172-12379708192CO5_HUMAN165-195312A:165-195
B:165-195
31
31
1.7ENST000002236427ENSE00000724375chr9:123794473-12379439183CO5_HUMAN195-223292A:195-223
B:195-223
29
29
1.8ENST000002236428ENSE00000724372chr9:123792765-12379267591CO5_HUMAN223-253312A:223-253
B:223-253
31
31
1.9ENST000002236429ENSE00000724368chr9:123789552-123789438115CO5_HUMAN253-291392A:253-291
B:253-291
39
39
1.11ENST0000022364211ENSE00000724364chr9:123787858-123787732127CO5_HUMAN292-334432A:292-334
B:292-334
43
43
1.12ENST0000022364212ENSE00000806455chr9:123785797-123785682116CO5_HUMAN334-372392A:334-372
B:334-372
39
39
1.13ENST0000022364213ENSE00000724360chr9:123783972-123783787186CO5_HUMAN373-434622A:373-434
B:373-434
62
62
1.14ENST0000022364214ENSE00000724358chr9:123782457-123782254204CO5_HUMAN435-502682A:435-502
B:435-502
68
68
1.15ENST0000022364215ENSE00000724356chr9:123780130-123779921210CO5_HUMAN503-572702A:503-572
B:503-572
70
70
1.16ENST0000022364216ENSE00000724353chr9:123779789-123779640150CO5_HUMAN573-622502A:573-622
B:573-622
50
50
1.17ENST0000022364217ENSE00000724350chr9:123778661-123778532130CO5_HUMAN623-666442A:623-666
B:623-666
44
44
1.18ENST0000022364218ENSE00000724347chr9:123777539-12377747763CO5_HUMAN666-687222A:666-687 (gaps)
B:666-687 (gaps)
22
22
1.19ENST0000022364219ENSE00000724343chr9:123776348-123776151198CO5_HUMAN687-753672A:687-753 (gaps)
B:687-753 (gaps)
67
67
1.20ENST0000022364220ENSE00000724339chr9:123770776-12377068691CO5_HUMAN753-783312A:753-783
B:753-783
31
31
1.21aENST0000022364221aENSE00000724335chr9:123769255-12376918274CO5_HUMAN783-808262A:783-808
B:783-808
26
26
1.22ENST0000022364222ENSE00000724332chr9:123768336-123768197140CO5_HUMAN808-854472A:808-854
B:808-854
47
47
1.24ENST0000022364224ENSE00000724329chr9:123760052-123759825228CO5_HUMAN855-930762A:855-930 (gaps)
B:855-930 (gaps)
76
76
1.25ENST0000022364225ENSE00000724327chr9:123758578-12375851861CO5_HUMAN931-951212A:931-951
B:931-951
21
21
1.26ENST0000022364226ENSE00000724325chr9:123753558-12375346990CO5_HUMAN951-981312A:951-981
B:951-981
31
31
1.27bENST0000022364227bENSE00000724322chr9:123752058-123751846213CO5_HUMAN981-1052722A:981-1052
B:981-1052
72
72
1.28ENST0000022364228ENSE00000724320chr9:123751399-12375132476CO5_HUMAN1052-1077262A:1052-1077
B:1052-1077
26
26
1.29ENST0000022364229ENSE00000724317chr9:123745092-123744933160CO5_HUMAN1077-1130542A:1077-1130
B:1077-1130
54
54
1.30aENST0000022364230aENSE00000724315chr9:123744217-12374412296CO5_HUMAN1131-1162322A:1131-1162
B:1131-1162
32
32
1.31ENST0000022364231ENSE00000724313chr9:123742532-123742361172CO5_HUMAN1163-1220582A:1163-1220
B:1163-1220
58
58
1.33ENST0000022364233ENSE00000724312chr9:123739183-123738978206CO5_HUMAN1220-1288692A:1220-1288
B:1220-1288
69
69
1.34ENST0000022364234ENSE00000724311chr9:123737209-123737057153CO5_HUMAN1289-1339512A:1289-1339
B:1289-1339
51
51
1.35ENST0000022364235ENSE00000724308chr9:123734270-12373420863CO5_HUMAN1340-1360212A:1340-1360
B:1340-1360
21
21
1.36ENST0000022364236ENSE00000724304chr9:123732529-12373244882CO5_HUMAN1361-1388282A:1361-1386
B:1361-1386
26
26
1.37ENST0000022364237ENSE00000724301chr9:123731396-12373133958CO5_HUMAN1388-1407202A:1399-1407
B:1399-1407
9
9
1.38ENST0000022364238ENSE00000724299chr9:123726016-123725914103CO5_HUMAN1407-1441352A:1407-1441
B:1407-1441
35
35
1.39ENST0000022364239ENSE00000724298chr9:123725245-12372517175CO5_HUMAN1442-1466252A:1442-1466
B:1442-1466
25
25
1.40aENST0000022364240aENSE00000724295chr9:123725054-123724949106CO5_HUMAN1467-1502362A:1467-1502
B:1467-1502
36
36
1.41ENST0000022364241ENSE00000724292chr9:123723843-12372376084CO5_HUMAN1502-1530292A:1502-1530
B:1502-1530
29
29
1.42ENST0000022364242ENSE00000724291chr9:123722615-12372252690CO5_HUMAN1530-1560312A:1530-1560
B:1530-1532
31
3
1.43aENST0000022364243aENSE00000724290chr9:123719646-12371956384CO5_HUMAN1560-1588291A:1560-1588
-
29
-
1.44ENST0000022364244ENSE00000724289chr9:123716146-123716008139CO5_HUMAN1588-1634471A:1588-1634
-
47
-
1.45ENST0000022364245ENSE00000806454chr9:123715146-123714616531CO5_HUMAN1634-1676431A:1634-1676
-
43
-

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:1622
 aligned with CO5_HUMAN | P01031 from UniProtKB/Swiss-Prot  Length:1676

    Alignment length:1655
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961       971       981       991      1001      1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121      1131      1141      1151      1161      1171      1181      1191      1201      1211      1221      1231      1241      1251      1261      1271      1281      1291      1301      1311      1321      1331      1341      1351      1361      1371      1381      1391      1401      1411      1421      1431      1441      1451      1461      1471      1481      1491      1501      1511      1521      1531      1541      1551      1561      1571      1581      1591      1601      1611      1621      1631      1641      1651      1661      1671     
           CO5_HUMAN     22 TYVISAPKIFRVGASENIVIQVYGYTEAFDATISIKSYPDKKFSYSSGHVHLSSENKFQNSAILTIQPKQLPGGQNPVSYVYLEVVSKHFSKSKRMPITYDNGFLFIHTDKPVYTPDQSVKVRVYSLNDDLKPAKRETVLTFIDPEGSEVDMVEEIDHIGIISFPDFKIPSNPRYGMWTIKAKYKEDFSTTGTAYFEVKEYVLPHFSVSIEPEYNFIGYKNFKNFEITIKARYFYNKVVTEADVYITFGIREDLKDDQKEMMQTAMQNTMLINGIAQVTFDSETAVKELSYYSLEDLNNKYLYIAVTVIESTGGFSEEAEIPGIKYVLSPYKLNLVATPLFLKPGIPYPIKVQVKDSLDQLVGGVPVTLNAQTIDVNQETSDLDPSKSVTRVDDGVASFVLNLPSGVTVLEFNVKTDAPDLPEENQAREGYRAIAYSSLSQSYLYIDWTDNHKALLVGEHLNIIVTPKSPYIDKITHYNYLILSKGKIIHFGTREKFSDASYQSINIPVTQNMVPSSRLLVYYIVTGEQTAELVSDSVWLNIEEKCGNQLQVHLSPDADAYSPGQTVSLNMATGMDSWVALAAVDSAVYGVQRGAKKPLERVFQFLEKSDLGCGAGGGLNNANVFHLAGLTFLTNANADDSQENDEPCKEILRPRRTLQKKIEEIAAKYKHSVVKKCCYDGACVNNDETCEQRAARISLGPRCIKAFTECCVVASQLRANISHKDMQLGRLHMKTLLPVSKPEIRSYFPESWLWEVHLVPRRKQLQFALPDSLTTWEIQGVGISNTGICVADTVKAKVFKDVFLEMNIPYSVVRGEQIQLKGTVYNYRTSGMQFCVKMSAVEGICTSESPVIDHQGTKSSKCVRQKVEGSSSHLVTFTVLPLEIGLHNINFSLETWFGKEILVKTLRVVPEGVKRESYSGVTLDPRGIYGTISRRKEFPYRIPLDLVPKTEIKRILSVKGLLVGEILSAVLSQEGINILTHLPKGSAEAELMSVVPVFYVFHYLETGNHWNIFHSDPLIEKQKLKKKLKEGMLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLENTLPAQSTFTLAISAYALSLGDKTHPQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAYALLTSLNLKDINYVNPVIKWLSEEQRYGGGFYSTQDTINAIEGLTEYSLLVKQLRLSMDIDVSYKHKGALHNYKMTDKNFLGRPVEVLLNDDLIVSTGFGSGLATVHVTTVVHKTSTSEEVCSFYLKIDTQDIEASHYRGYGNSDYKRIVACASYKPSREESSSGSSHAVMDISLPTGISANEEDLKALVEGVDQLFTDYQIKDGHVILQLNSIPSSDFLCVRFRIFELFEVGFLSPATFTVYEYHRPDKQCTMFYSTSNIKIQKVCEGAACKCVEADCGQMQEELDLTISAETRKQTACKPEIAYAYKVSITSITVENVFVKYKATLLDIYKTGEAVAEKDSEITFIKKVTCTNAELVKGRQYLIMGKEALQIKYNFSFRYIYPLDSLTWIEYWPRDTTCSSCQAFLANLDEFAEDIFLNGC 1676
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NTR-3klsA01 A:1550-1660                                                                                        ---------------- Pfam domains
         Sec.struct. author .eeeeee..ee....eeeeeee.........eeeee.......eeeeee.........eeeeee................eeeeee....eeeeee.ee....eeeeee...ee....ee.eeeeee..........eeeeee.........eee.....eee...ee.......eeeeeeeee......eeeeeeee.ee.....eeeee....ee.........eeeeeee...ee...eee..eeeee........................eee......................eeeeeeeeee......eeeee...ee.....................ee..ee............eeeeeeeeee....eee...eeee......ee..ee.....eeeeeeeeee...........eeeeeee..........eeee...........eeeeeee..........eeeeeee....eeeeeeee.......eeeeee.hhhhh.eeeeeeeeeee....eeeeeeeeeee...........ee..............eeee....ee.....ee.............hhhhhhhh.............hhhhhhhhh.eee....................-----.hhhhhhhhhhh.hhhhhhhhhhhhh.....hhhhhhhh...hhhhhhhhhhhhhhhhhhh....-----...............ee.............ee..eee.........eeee.....ee..ee......eeee...eeeee....eee....eeeeeeeee.....ee...ee.....ee....-----------.....ee....eeeeeeeeee.......eeeeeee..eeeeeee..eee...eeee...eeee............eee..............eeeeeeee...hhhhhh.................hhhhhhhhhhhhhhhhhhhh..hhhhh..hhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhhhhhheee.....eee................hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh.................................ee......eee........eeeeeeeeee..........eeee..ee..------------..eeeeeeee.............eeeeee.....eehhhhhhhhhh..........ee..eeeeee........eeeeeeee..........eeeeeee..eeeeee..ee..................................hhhhhhhh........eeeeee...........eeeeeeeeee..........eeee................ee...........................ee............hhhhhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) ---------------------------------------------------------------------------------------------------------------------------I----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M----------------------------------I-----------------------------------------------------------G--------------------------------------------------------------------S-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------I----------------------------------------------------------------------------------C------------------------------------------Q----V--------------------------------Y------------------------------------------------------------------T---N-----K---------L----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N------------------------------------------------------A-----------------------------------------------------------------------D----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                PROSITE (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ANAPHYLATOXIN_1  PDB: A:698-732    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NTR  PDB: A:1532-1676 UniProt: 1532-1676                                                                                                          PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ANAPHYLATOXIN_2  PDB: A:698-732    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1----------------------------------------------------------------Exon 1.4  PDB: A:87-141 UniProt: 87-141                -----------------------Exon 1.6a  PDB: A:165-195      ---------------------------Exon 1.8  PDB: A:223-253       --------------------------------------Exon 1.11  PDB: A:292-334 UniProt: 292-334 --------------------------------------Exon 1.13  PDB: A:373-434 UniProt: 373-434                    Exon 1.14  PDB: A:435-502 UniProt: 435-502                          Exon 1.15  PDB: A:503-572 UniProt: 503-572                            Exon 1.16  PDB: A:573-622 UniProt: 573-622        Exon 1.17  PDB: A:623-666 UniProt: 623-666  --------------------Exon 1.19  PDB: A:687-753 (gaps) UniProt: 687-753                  -----------------------------Exon 1.21a  PDB: A:783-808----------------------------------------------Exon 1.24  PDB: A:855-930 (gaps) UniProt: 855-930                           Exon 1.25            -----------------------------Exon 1.27b  PDB: A:981-1052 UniProt: 981-1052                           ------------------------Exon 1.29  PDB: A:1077-1130 UniProt: 1077-1130        Exon 1.30a  PDB: A:1131-1162    Exon 1.31  PDB: A:1163-1220 UniProt: 1163-1220            --------------------------------------------------------------------Exon 1.34  PDB: A:1289-1339 UniProt: 1289-1339     Exon 1.35            Exon 1.36  PDB: A:1361-1386 ------------------Exon 1.38  PDB: A:1407-1441        Exon 1.39                Exon 1.40a  PDB: A:1467-1502        ---------------------------Exon 1.42  PDB: A:1530-1560    ---------------------------Exon 1.44  PDB: A:1588-1634 UniProt: 1588-1634 ------------------------------------------ Transcript 1 (1)
           Transcript 1 (2) Exon 1.3  PDB: A:22-86 UniProt: 22-86                            ------------------------------------------------------Exon 1.5  PDB: A:141-164------------------------------Exon 1.7  PDB: A:195-223     -----------------------------Exon 1.9  PDB: A:253-291               ------------------------------------------Exon 1.12  PDB: A:334-372              -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.18             -----------------------------------------------------------------Exon 1.20  PDB: A:753-783      ------------------------Exon 1.22  PDB: A:808-854 UniProt: 808-854     ------------------------------------------------------------------------------------------------Exon 1.26  PDB: A:951-981      ----------------------------------------------------------------------Exon 1.28  PDB: A:1052-107----------------------------------------------------------------------------------------------------------------------------------------------Exon 1.33  PDB: A:1220-1288 UniProt: 1220-1288                       ---------------------------------------------------------------------------------------------------Exon 1.37           ----------------------------------------------------------------------------------------------Exon 1.41  PDB: A:1502-1530  -----------------------------Exon 1.43a  PDB: A:1560-1588 ---------------------------------------------Exon 1.45  PDB: A:1634-1676                 Transcript 1 (2)
                3kls A   22 TYVISAPKIFRVGASENIVIQVYGYTEAFDATISIKSYPDKKFSYSSGHVHLSSENKFQNSAILTIQPKQLPGGQNPVSYVYLEVVSKHFSKSKRMPITYDNGFLFIHTDKPVYTPDQSVKVRVYSLNDDLKPAKRETVLTFIDPEGSEVDMVEEIDHIGIISFPDFKIPSNPRYGMWTIKAKYKEDFSTTGTAYFEVKEYVLPHFSVSIEPEYNFIGYKNFKNFEITIKARYFYNKVVTEADVYITFGIREDLKDDQKEMMQTAMQNTMLINGIAQVTFDSETAVKELSYYSLEDLNNKYLYIAVTVIESTGGFSEEAEIPGIKYVLSPYKLNLVATPLFLKPGIPYPIKVQVKDSLDQLVGGVPVTLNAQTIDVNQETSDLDPSKSVTRVDDGVASFVLNLPSGVTVLEFNVKTDAPDLPEENQAREGYRAIAYSSLSQSYLYIDWTDNHKALLVGEHLNIIVTPKSPYIDKITHYNYLILSKGKIIHFGTREKFSDASYQSINIPVTQNMVPSSRLLVYYIVTGEQTAELVSDSVWLNIEEKCGNQLQVHLSPDADAYSPGQTVSLNMATGMDSWVALAAVDSAVYGVQRGAKKPLERVFQFLEKSDLGCGAGGGLNNANVFHLAGLTFLTNANADDSQENDEPCKEIL-----LQKKIEEIAAKYKHSVVKKCCYDGACVNNDETCEQRAARISLGPRCIKAFTECCVVASQLRANIS-----LGRLHMKTLLPVSKPEIRSYFPESWLWEVHLVPRRKQLQFALPDSLTTWEIQGIGISNTGICVADTVKAKVFKDVFLEMNIPYSVVRGEQIQLKGTVYNYRTSGMQFCVKMSAVEGICTSES-----------KCVRQKVEGSSSHLVTFTVLPLEIGLHNINFSLETWFGKEILVKTLRVVPEGVKRESYSGVTLDPRGIYGTISRRKEFPYRIPLDLVPKTEIKRILSVKGLLVGEILSAVLSQEGINILTHLPKGSAEAELMSVVPVFYVFHYLETGNHWNIFHSDPLIEKQKLKKKLKEGMLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLENTLPAQSTFTLAISAYALSLGDKTHPQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAYALLTSLNLKDINYVNPVIKWLSEEQRYGGGFYSTQDTINAIEGLTEYSLLVKQLRLSMDIDVSYKHKGALHNYKMTDKNFLGRPVEVLLNDDLIVSTGFGSGLATVHVTTVVHKTSTSEEVCSFYLKIDTQDI------------YKRIVACASYKPSREESSSGSSHAVMDISLPTGISANEEDLKALVEGVDQLFTDYQIKDGHVILQLNSIPSSDFLCVRFRIFELFEVGFLSPATFTVYEYHRPDKQCTMFYSTSNIKIQKVCEGAACKCVEADCGQMQEELDLTISAETRKQTACKPEIAYAYKVSITSITVENVFVKYKATLLDIYKTGEAVAEKDSEITFIKKVTCTNAELVKGRQYLIMGKEALQIKYNFSFRYIYPLDSLTWIEYWPRDTTCSSCQAFLANLDEFAEDIFLNGC 1676
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671 |     681       691       701       711       721       731       741 |     751       761       771       781       791       801       811       821       831       841       851       861        |-         -|      891       901       911       921       931       941       951       961       971       981       991      1001      1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121      1131      1141      1151      1161      1171      1181      1191      1201      1211      1221      1231      1241      1251      1261      1271      1281      1291      1301      1311      1321      1331      1341      1351      1361      1371      1381    |    -      1401      1411      1421      1431      1441      1451      1461      1471      1481      1491      1501      1511      1521      1531      1541      1551      1561      1571      1581      1591      1601      1611      1621      1631      1641      1651      1661      1671     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     673   679                                                             743   749                                                                                                                      870         882                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    1386         1399                                                                                                                                                                                                                                                                                     

Chain B from PDB  Type:PROTEIN  Length:1478
 aligned with CO5_HUMAN | P01031 from UniProtKB/Swiss-Prot  Length:1676

    Alignment length:1511
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961       971       981       991      1001      1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121      1131      1141      1151      1161      1171      1181      1191      1201      1211      1221      1231      1241      1251      1261      1271      1281      1291      1301      1311      1321      1331      1341      1351      1361      1371      1381      1391      1401      1411      1421      1431      1441      1451      1461      1471      1481      1491      1501      1511      1521      1531 
           CO5_HUMAN     22 TYVISAPKIFRVGASENIVIQVYGYTEAFDATISIKSYPDKKFSYSSGHVHLSSENKFQNSAILTIQPKQLPGGQNPVSYVYLEVVSKHFSKSKRMPITYDNGFLFIHTDKPVYTPDQSVKVRVYSLNDDLKPAKRETVLTFIDPEGSEVDMVEEIDHIGIISFPDFKIPSNPRYGMWTIKAKYKEDFSTTGTAYFEVKEYVLPHFSVSIEPEYNFIGYKNFKNFEITIKARYFYNKVVTEADVYITFGIREDLKDDQKEMMQTAMQNTMLINGIAQVTFDSETAVKELSYYSLEDLNNKYLYIAVTVIESTGGFSEEAEIPGIKYVLSPYKLNLVATPLFLKPGIPYPIKVQVKDSLDQLVGGVPVTLNAQTIDVNQETSDLDPSKSVTRVDDGVASFVLNLPSGVTVLEFNVKTDAPDLPEENQAREGYRAIAYSSLSQSYLYIDWTDNHKALLVGEHLNIIVTPKSPYIDKITHYNYLILSKGKIIHFGTREKFSDASYQSINIPVTQNMVPSSRLLVYYIVTGEQTAELVSDSVWLNIEEKCGNQLQVHLSPDADAYSPGQTVSLNMATGMDSWVALAAVDSAVYGVQRGAKKPLERVFQFLEKSDLGCGAGGGLNNANVFHLAGLTFLTNANADDSQENDEPCKEILRPRRTLQKKIEEIAAKYKHSVVKKCCYDGACVNNDETCEQRAARISLGPRCIKAFTECCVVASQLRANISHKDMQLGRLHMKTLLPVSKPEIRSYFPESWLWEVHLVPRRKQLQFALPDSLTTWEIQGVGISNTGICVADTVKAKVFKDVFLEMNIPYSVVRGEQIQLKGTVYNYRTSGMQFCVKMSAVEGICTSESPVIDHQGTKSSKCVRQKVEGSSSHLVTFTVLPLEIGLHNINFSLETWFGKEILVKTLRVVPEGVKRESYSGVTLDPRGIYGTISRRKEFPYRIPLDLVPKTEIKRILSVKGLLVGEILSAVLSQEGINILTHLPKGSAEAELMSVVPVFYVFHYLETGNHWNIFHSDPLIEKQKLKKKLKEGMLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLENTLPAQSTFTLAISAYALSLGDKTHPQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAYALLTSLNLKDINYVNPVIKWLSEEQRYGGGFYSTQDTINAIEGLTEYSLLVKQLRLSMDIDVSYKHKGALHNYKMTDKNFLGRPVEVLLNDDLIVSTGFGSGLATVHVTTVVHKTSTSEEVCSFYLKIDTQDIEASHYRGYGNSDYKRIVACASYKPSREESSSGSSHAVMDISLPTGISANEEDLKALVEGVDQLFTDYQIKDGHVILQLNSIPSSDFLCVRFRIFELFEVGFLSPATFTVYEYHRPDKQCTMFYSTSNIKIQKVCEGAACKCVEADC 1532
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------------------------------------------------------------------------------------------------------A2M_N-3klsB03 B:125-219                                                                        -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A2M_N_2-3klsB07 B:467-612                                                                                                                         -------------------------------------------------------------------------------------ANATO-3klsB11 B:698-732            ---------------------------------------A2M-3klsB05 B:772-859                                                                   -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A2M_comp-3klsB01 B:1051-1302                                                                                                                                                                                                                                --------------------------------------------------------------------------------------------------------------------A2M_recep-3klsB09 B:1419-1509                                                              ----------------------- Pfam domains (1)
           Pfam domains (2) -------------------------------------------------------------------------------------------------------A2M_N-3klsB04 B:125-219                                                                        -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A2M_N_2-3klsB08 B:467-612                                                                                                                         -------------------------------------------------------------------------------------ANATO-3klsB12 B:698-732            ---------------------------------------A2M-3klsB06 B:772-859                                                                   -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A2M_comp-3klsB02 B:1051-1302                                                                                                                                                                                                                                --------------------------------------------------------------------------------------------------------------------A2M_recep-3klsB10 B:1419-1509                                                              ----------------------- Pfam domains (2)
         Sec.struct. author .eeeeee..ee....eeeeeee.........eeeee.......eeeeee.........eeeeee................eeeeee....eeeeee.ee....eeeeee...ee....ee.eeeeee..........eeeeee.........eee.....ee....ee.......eeeeeeeee......eeeeeeee.ee.....eeeee....ee.........eeeeeee...ee...eee..eeeee........................eee......................eeeeeeeeee......eeeee...ee.....................ee..ee............eeeeeeeeee....eee...eeee......ee..ee.....eeeeeeeeee...........eeeeeee..........eeee...........eeeeeee..........eeeeeee....eeeeeeee.......eeeeee.hhhhh.eeeeeeeeeee....eeeeeeeeeee...........ee..............eeee....ee.....ee.............hhhhhhhh.............hhhhhhhhh.eee....................-----.hhhhhhhhhhh.hhhhhhhhhhhhh.....hhhhhhhh...hhhhhhhhhhhhhhhhhhh....-----...............ee.............ee..eee.........eeee.....ee..ee......eeee...eeeee....eee....eeeeeeeee.....ee...ee.....ee....-----------.....ee....eeeeeeeeee.......eeeeeee..eeeeeee..eee...eeee...eeee............eee..............eeeeeeee...hhhhhh.................hhhhhhhhhhhhhhhhhhhh..hhhhh..hhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhhhhhheee.....eee................hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh.................................ee......eee........eeeeeeeeee..........eeee..ee..------------..eeeeeeee.............eeeeee.....eehhhhhhhhhh..........ee..eeeeee........eeeeeeee..........eeeeeee..hhhhheeeee....................... Sec.struct. author
             SAPs(SNPs) (1) ---------------------------------------------------------------------------------------------------------------------------I----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M----------------------------------I-----------------------------------------------------------G--------------------------------------------------------------------S-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------I----------------------------------------------------------------------------------C------------------------------------------Q----V--------------------------------Y------------------------------------------------------------------T---N-----K---------L----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N------------------------------------------------------A-----------------------------------------------------------------------D----------------------------------------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                PROSITE (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ANAPHYLATOXIN_1  PDB: B:698-732    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ANAPHYLATOXIN_2  PDB: B:698-732    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1----------------------------------------------------------------Exon 1.4  PDB: B:87-141 UniProt: 87-141                -----------------------Exon 1.6a  PDB: B:165-195      ---------------------------Exon 1.8  PDB: B:223-253       --------------------------------------Exon 1.11  PDB: B:292-334 UniProt: 292-334 --------------------------------------Exon 1.13  PDB: B:373-434 UniProt: 373-434                    Exon 1.14  PDB: B:435-502 UniProt: 435-502                          Exon 1.15  PDB: B:503-572 UniProt: 503-572                            Exon 1.16  PDB: B:573-622 UniProt: 573-622        Exon 1.17  PDB: B:623-666 UniProt: 623-666  --------------------Exon 1.19  PDB: B:687-753 (gaps) UniProt: 687-753                  -----------------------------Exon 1.21a  PDB: B:783-808----------------------------------------------Exon 1.24  PDB: B:855-930 (gaps) UniProt: 855-930                           Exon 1.25            -----------------------------Exon 1.27b  PDB: B:981-1052 UniProt: 981-1052                           ------------------------Exon 1.29  PDB: B:1077-1130 UniProt: 1077-1130        Exon 1.30a  PDB: B:1131-1162    Exon 1.31  PDB: B:1163-1220 UniProt: 1163-1220            --------------------------------------------------------------------Exon 1.34  PDB: B:1289-1339 UniProt: 1289-1339     Exon 1.35            Exon 1.36  PDB: B:1361-1386 ------------------Exon 1.38  PDB: B:1407-1441        Exon 1.39                Exon 1.40a  PDB: B:1467-1502        ---------------------------1.4 Transcript 1 (1)
           Transcript 1 (2) Exon 1.3  PDB: B:22-86 UniProt: 22-86                            ------------------------------------------------------Exon 1.5  PDB: B:141-164------------------------------Exon 1.7  PDB: B:195-223     -----------------------------Exon 1.9  PDB: B:253-291               ------------------------------------------Exon 1.12  PDB: B:334-372              -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.18             -----------------------------------------------------------------Exon 1.20  PDB: B:753-783      ------------------------Exon 1.22  PDB: B:808-854 UniProt: 808-854     ------------------------------------------------------------------------------------------------Exon 1.26  PDB: B:951-981      ----------------------------------------------------------------------Exon 1.28  PDB: B:1052-107----------------------------------------------------------------------------------------------------------------------------------------------Exon 1.33  PDB: B:1220-1288 UniProt: 1220-1288                       ---------------------------------------------------------------------------------------------------Exon 1.37           ----------------------------------------------------------------------------------------------Exon 1.41  PDB: B:1502-1530  -- Transcript 1 (2)
                3kls B   22 TYVISAPKIFRVGASENIVIQVYGYTEAFDATISIKSYPDKKFSYSSGHVHLSSENKFQNSAILTIQPKQLPGGQNPVSYVYLEVVSKHFSKSKRMPITYDNGFLFIHTDKPVYTPDQSVKVRVYSLNDDLKPAKRETVLTFIDPEGSEVDMVEEIDHIGIISFPDFKIPSNPRYGMWTIKAKYKEDFSTTGTAYFEVKEYVLPHFSVSIEPEYNFIGYKNFKNFEITIKARYFYNKVVTEADVYITFGIREDLKDDQKEMMQTAMQNTMLINGIAQVTFDSETAVKELSYYSLEDLNNKYLYIAVTVIESTGGFSEEAEIPGIKYVLSPYKLNLVATPLFLKPGIPYPIKVQVKDSLDQLVGGVPVTLNAQTIDVNQETSDLDPSKSVTRVDDGVASFVLNLPSGVTVLEFNVKTDAPDLPEENQAREGYRAIAYSSLSQSYLYIDWTDNHKALLVGEHLNIIVTPKSPYIDKITHYNYLILSKGKIIHFGTREKFSDASYQSINIPVTQNMVPSSRLLVYYIVTGEQTAELVSDSVWLNIEEKCGNQLQVHLSPDADAYSPGQTVSLNMATGMDSWVALAAVDSAVYGVQRGAKKPLERVFQFLEKSDLGCGAGGGLNNANVFHLAGLTFLTNANADDSQENDEPCKEIL-----LQKKIEEIAAKYKHSVVKKCCYDGACVNNDETCEQRAARISLGPRCIKAFTECCVVASQLRANIS-----LGRLHMKTLLPVSKPEIRSYFPESWLWEVHLVPRRKQLQFALPDSLTTWEIQGIGISNTGICVADTVKAKVFKDVFLEMNIPYSVVRGEQIQLKGTVYNYRTSGMQFCVKMSAVEGICTSES-----------KCVRQKVEGSSSHLVTFTVLPLEIGLHNINFSLETWFGKEILVKTLRVVPEGVKRESYSGVTLDPRGIYGTISRRKEFPYRIPLDLVPKTEIKRILSVKGLLVGEILSAVLSQEGINILTHLPKGSAEAELMSVVPVFYVFHYLETGNHWNIFHSDPLIEKQKLKKKLKEGMLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLENTLPAQSTFTLAISAYALSLGDKTHPQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAYALLTSLNLKDINYVNPVIKWLSEEQRYGGGFYSTQDTINAIEGLTEYSLLVKQLRLSMDIDVSYKHKGALHNYKMTDKNFLGRPVEVLLNDDLIVSTGFGSGLATVHVTTVVHKTSTSEEVCSFYLKIDTQDI------------YKRIVACASYKPSREESSSGSSHAVMDISLPTGISANEEDLKALVEGVDQLFTDYQIKDGHVILQLNSIPSSDFLCVRFRIFELFEVGFLSPATFTVYEYHRPDKQCTMFYSTSNIKIQKVCEGAACKCVEADC 1532
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671 |     681       691       701       711       721       731       741 |     751       761       771       781       791       801       811       821       831       841       851       861        |-         -|      891       901       911       921       931       941       951       961       971       981       991      1001      1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121      1131      1141      1151      1161      1171      1181      1191      1201      1211      1221      1231      1241      1251      1261      1271      1281      1291      1301      1311      1321      1331      1341      1351      1361      1371      1381    |    -      1401      1411      1421      1431      1441      1451      1461      1471      1481      1491      1501      1511      1521      1531 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     673   679                                                             743   749                                                                                                                      870         882                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    1386         1399                                                                                                                                     

Chain X from PDB  Type:PROTEIN  Length:191
                                                                                                                                                                                                                                
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3klsX01     --------------------------------------------------------------------------3klsX01 X:40-51,X:126-230  [code=3.10.20.120, no name defined]                                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh......eeee........................................eee.....ee.....ee....ee........eee.eeeeeee..eeeeee..eee...eeehhhhhhhhhhhhhhhh........eeeeeeeee..eee...............eee.hhh..eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3kls X   40 LHDIRDLHRYYSSESFEYSNVSGKVENYNGSNVVRFNPKDQNHQLFLLGKDKEQYKEGLQGQNVFVVQELIDPNGRLSTVGGVTKKNNKTSETNTPLFVNKVNGEDLDASIDSFLIQKEEISLKELDFKIRQQLVNNYGLYKGTSKYGKIIINLKDENKVEIDLGDKLQFERMGDVLNSKDIRGISVTINQ  230
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229 

Chain Y from PDB  Type:PROTEIN  Length:191
                                                                                                                                                                                                                                
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3klsY01     --------------------------------------------------------------------------3klsY01 Y:40-51,Y:126-230  [code=3.10.20.120, no name defined]                                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh......eeee........................................eee.....ee.....ee....ee........eee.eeeeeee..eeeeee..eee...eeehhhhhhhhhhhhhhhh........eeee.eeee..eee...............eee.hhh..eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3kls Y   40 LHDIRDLHRYYSSESFEYSNVSGKVENYNGSNVVRFNPKDQNHQLFLLGKDKEQYKEGLQGQNVFVVQELIDPNGRLSTVGGVTKKNNKTSETNTPLFVNKVNGEDLDASIDSFLIQKEEISLKELDFKIRQQLVNNYGLYKGTSKYGKIIINLKDENKVEIDLGDKLQFERMGDVLNSKDIRGISVTINQ  230
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3KLS)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (7, 13)

Asymmetric Unit
(-)
Clan: 6_Hairpin (120)
(-)
Clan: E-set (290)
(-)
Family: A2M_N (14)
2aA2M_N-3klsB03B:125-219
2bA2M_N-3klsB04B:125-219
(-)
Clan: Ig (577)
(-)
Family: A2M (13)
3aA2M-3klsB05B:772-859
3bA2M-3klsB06B:772-859
(-)
Family: NTR (13)
4aNTR-3klsA01A:1550-1660

(-) Gene Ontology  (29, 29)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (CO5_HUMAN | P01031)
molecular function
    GO:0008009    chemokine activity    The function of a family of small chemotactic cytokines; their name is derived from their ability to induce directed chemotaxis in nearby responsive cells. All chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation. Some chemokines are considered pro-inflammatory and can be induced during an immune response to recruit cells of the immune system to a site of infection, while others are considered homeostatic and are involved in controlling the migration of cells during normal processes of tissue maintenance or development. Chemokines are found in all vertebrates, some viruses and some bacteria.
    GO:0004866    endopeptidase inhibitor activity    Stops, prevents or reduces the activity of an endopeptidase, any enzyme that hydrolyzes nonterminal peptide bonds in polypeptides.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
biological process
    GO:0007186    G-protein coupled receptor signaling pathway    A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription. The pathway can start from the plasma membrane, Golgi or nuclear membrane (PMID:24568158 and PMID:16902576).
    GO:0000187    activation of MAPK activity    The initiation of the activity of the inactive enzyme MAP kinase (MAPK).
    GO:0060326    cell chemotaxis    The directed movement of a motile cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis).
    GO:0007166    cell surface receptor signaling pathway    A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription.
    GO:0006935    chemotaxis    The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis).
    GO:0006956    complement activation    Any process involved in the activation of any of the steps of the complement cascade, which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes; the initial steps of complement activation involve one of three pathways, the classical pathway, the alternative pathway, and the lectin pathway, all of which lead to the terminal complement pathway.
    GO:0006957    complement activation, alternative pathway    Any process involved in the activation of any of the steps of the alternative pathway of the complement cascade which allows for the direct killing of microbes and the regulation of other immune processes.
    GO:0006958    complement activation, classical pathway    Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes.
    GO:0019835    cytolysis    The rupture of cell membranes and the loss of cytoplasm.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0001701    in utero embryonic development    The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth. An example of this process is found in Mus musculus.
    GO:0006954    inflammatory response    The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0010951    negative regulation of endopeptidase activity    Any process that decreases the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins.
    GO:0010760    negative regulation of macrophage chemotaxis    Any process that decreases the rate, frequency or extent of macrophage chemotaxis. Macrophage chemotaxis is the movement of a macrophage in response to an external stimulus.
    GO:0045766    positive regulation of angiogenesis    Any process that activates or increases angiogenesis.
    GO:0090197    positive regulation of chemokine secretion    Any process that increases the rate, frequency or extent of chemokine secretion, the regulated release of chemokines from a cell.
    GO:0098779    positive regulation of macromitophagy in response to mitochondrial depolarization    The macromitophagy process that is triggered by a detection of the loss of mitochondrial membrane potential.
    GO:0010575    positive regulation of vascular endothelial growth factor production    Any process that increases or activates the frequency, rate, or extent of production of vascular endothelial growth factor.
    GO:0030449    regulation of complement activation    Any process that modulates the frequency, rate or extent of complement activation.
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0005579    membrane attack complex    A protein complex produced by sequentially activated components of the complement cascade inserted into a target cell membrane and forming a pore leading to cell lysis via ion and water flow.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CO5_HUMAN | P010311cfa 1kjs 1xwe 3cu7 3hqa 3hqb 3km9 3prx 3pvm 4a5w 4e0s 4p39 4uu9 5b4p 5b71 5hcc 5hcd 5hce 5i5k

(-) Related Entries Specified in the PDB File

2qej STRUCTURE OF THE COMPLEX BETWEEN SSL7 AND IGA FC
3cu7 STRUCTURE OF COMPLEMENT C5
3km9 STRUCTURE OF COMPLEMENT C5 IN COMPLEX WITH C-TERMINAL BETA- GRASP DOMAIN OF SSL7