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3K77
Biol. Unit 4
Info
Asym.Unit (412 KB)
Biol.Unit 1 (52 KB)
Biol.Unit 2 (53 KB)
Biol.Unit 3 (53 KB)
Biol.Unit 4 (53 KB)
Biol.Unit 5 (52 KB)
Biol.Unit 6 (53 KB)
Biol.Unit 7 (52 KB)
Biol.Unit 8 (53 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF XRCC1
Authors
:
M. J. Cuneo, R. E. London
Date
:
12 Oct 09 (Deposition) - 28 Apr 10 (Release) - 28 Apr 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Keywords
:
Xrcc1, Base Excision Repair, Scaffolding Protein, Dna Damage, Dna Repair, Nucleus, Phosphoprotein, Polymorphism, Ubl Conjugation, Protein Binding
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. J. Cuneo, R. E. London
Oxidation State Of The Xrcc1 N-Terminal Domain Regulates Dna Polymerase Beta Binding Affinity.
Proc. Natl. Acad. Sci. Usa V. 107 6805 2010
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_014773 (R7L, chain D, )
2: VAR_014774 (V10M, chain D, )
3: VAR_016168 (V72A, chain D, )
4: VAR_029228 (R107H, chain D, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014773
R
7
L
XRCC1_HUMAN
Polymorphism
2307186
D
R
7
L
2
UniProt
VAR_014774
V
10
M
XRCC1_HUMAN
Polymorphism
2307171
D
V
10
M
3
UniProt
VAR_016168
V
72
A
XRCC1_HUMAN
Polymorphism
25496
D
V
72
A
4
UniProt
VAR_029228
R
107
H
XRCC1_HUMAN
Polymorphism
2228487
D
R
107
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3k77a_ (A:)
1b: SCOP_d3k77b_ (B:)
1c: SCOP_d3k77c_ (C:)
1d: SCOP_d3k77d_ (D:)
1e: SCOP_d3k77e_ (E:)
1f: SCOP_d3k77f_ (F:)
1g: SCOP_d3k77g_ (G:)
1h: SCOP_d3k77h_ (H:)
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Protein Domains
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Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
N-terminal domain of xrcc1
(5)
Protein domain
:
N-terminal domain of xrcc1
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d3k77a_
A:
1b
d3k77b_
B:
1c
d3k77c_
C:
1d
d3k77d_
D:
1e
d3k77e_
E:
1f
d3k77f_
F:
1g
d3k77g_
G:
1h
d3k77h_
H:
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_3k77A00 (A:2-153)
1b: CATH_3k77B00 (B:2-153)
1c: CATH_3k77C00 (C:2-153)
1d: CATH_3k77D00 (D:2-153)
1e: CATH_3k77E00 (E:2-153)
1f: CATH_3k77F00 (F:2-153)
1g: CATH_3k77G00 (G:2-153)
1h: CATH_3k77H00 (H:2-153)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
Human (Homo sapiens)
(39)
1a
3k77A00
A:2-153
1b
3k77B00
B:2-153
1c
3k77C00
C:2-153
1d
3k77D00
D:2-153
1e
3k77E00
E:2-153
1f
3k77F00
F:2-153
1g
3k77G00
G:2-153
1h
3k77H00
H:2-153
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_XRCC1_N_3k77H01 (H:2-151)
1b: PFAM_XRCC1_N_3k77H02 (H:2-151)
1c: PFAM_XRCC1_N_3k77H03 (H:2-151)
1d: PFAM_XRCC1_N_3k77H04 (H:2-151)
1e: PFAM_XRCC1_N_3k77H05 (H:2-151)
1f: PFAM_XRCC1_N_3k77H06 (H:2-151)
1g: PFAM_XRCC1_N_3k77H07 (H:2-151)
1h: PFAM_XRCC1_N_3k77H08 (H:2-151)
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)
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Clan
:
GBD
(153)
Family
:
XRCC1_N
(4)
Homo sapiens (Human)
(4)
1a
XRCC1_N-3k77H01
H:2-151
1b
XRCC1_N-3k77H02
H:2-151
1c
XRCC1_N-3k77H03
H:2-151
1d
XRCC1_N-3k77H04
H:2-151
1e
XRCC1_N-3k77H05
H:2-151
1f
XRCC1_N-3k77H06
H:2-151
1g
XRCC1_N-3k77H07
H:2-151
1h
XRCC1_N-3k77H08
H:2-151
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Chain D
Asymmetric Unit 1
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Asym.Unit (412 KB)
Header - Asym.Unit
Biol.Unit 1 (52 KB)
Header - Biol.Unit 1
Biol.Unit 2 (53 KB)
Header - Biol.Unit 2
Biol.Unit 3 (53 KB)
Header - Biol.Unit 3
Biol.Unit 4 (53 KB)
Header - Biol.Unit 4
Biol.Unit 5 (52 KB)
Header - Biol.Unit 5
Biol.Unit 6 (53 KB)
Header - Biol.Unit 6
Biol.Unit 7 (52 KB)
Header - Biol.Unit 7
Biol.Unit 8 (53 KB)
Header - Biol.Unit 8
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