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3K3A
Biol. Unit 3
Info
Asym.Unit (982 KB)
Biol.Unit 1 (252 KB)
Biol.Unit 2 (254 KB)
Biol.Unit 3 (254 KB)
Biol.Unit 4 (254 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF B/PERTH NEURAMINIDASE D197E MUTANT IN COMPLEX WITH OSELTAMIVIR
Authors
:
A. J. Oakley, J. L. Mckimm-Breschkin
Date
:
02 Oct 09 (Deposition) - 01 Sep 10 (Release) - 15 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.59
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Biol. Unit 4: M,N,O,P (1x)
Keywords
:
Influenza, Neuraminidase, Mutation, Resistance, Tamiflu, Oseltamivir, Gs-4071, 196618-13-0, Hydrolase, Cell Membrane, Glycosidase, Membrane, Transmembrane, Virion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. J. Oakley, S. Barrett, T. S. Peat, J. Newman, V. A. Streltsov, L. Waddington, T. Saito, M. Tashiro, J. L. Mckimm-Breschkin
Structural And Functional Basis Of Resistance To Neuraminidase Inhibitors Of Influenza B Viruses.
J. Med. Chem. 2010
[
close entry info
]
Hetero Components
(3, 9)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
1m: CALCIUM ION (CAm)
1n: CALCIUM ION (CAn)
1o: CALCIUM ION (CAo)
1p: CALCIUM ION (CAp)
2a: (3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO... (G39a)
2b: (3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO... (G39b)
2c: (3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO... (G39c)
2d: (3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO... (G39d)
2e: (3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO... (G39e)
2f: (3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO... (G39f)
2g: (3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO... (G39g)
2h: (3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO... (G39h)
2i: (3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO... (G39i)
2j: (3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO... (G39j)
2k: (3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO... (G39k)
2l: (3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO... (G39l)
2m: (3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO... (G39m)
2n: (3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO... (G39n)
2o: (3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO... (G39o)
2p: (3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO... (G39p)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4a: YTTRIUM (III) ION (YT3a)
4b: YTTRIUM (III) ION (YT3b)
4c: YTTRIUM (III) ION (YT3c)
4d: YTTRIUM (III) ION (YT3d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
G39
4
Ligand/Ion
(3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO-3-(PENTAN-3-YLOXY)CYCLOHEX-1-ENE-1-CARBOXYLIC ACID
3
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
YT3
1
Ligand/Ion
YTTRIUM (III) ION
[
close Hetero Component info
]
Sites
(13, 13)
Info
All Sites
01: CC9 (SOFTWARE)
02: DC1 (SOFTWARE)
03: DC2 (SOFTWARE)
04: DC3 (SOFTWARE)
05: DC4 (SOFTWARE)
06: DC5 (SOFTWARE)
07: DC6 (SOFTWARE)
08: DC7 (SOFTWARE)
09: DC8 (SOFTWARE)
10: DC9 (SOFTWARE)
11: EC1 (SOFTWARE)
12: EC2 (SOFTWARE)
13: EC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
CC9
SOFTWARE
PRO I:83 , ASN I:284
BINDING SITE FOR RESIDUE NAG I 900
02
DC1
SOFTWARE
ASP I:293 , THR I:297 , ASP I:324 , GLY I:344 , GLY I:346
BINDING SITE FOR RESIDUE CA I 1000
03
DC2
SOFTWARE
GLU I:168 , HOH I:467 , HOH I:468 , HOH I:469 , HOH I:470 , HOH I:2007 , GLU J:168 , GLU K:168 , HOH K:467 , HOH K:2046 , HOH K:2048 , GLU L:168
BINDING SITE FOR RESIDUE YT3 J 3
04
DC3
SOFTWARE
ARG I:116 , GLU I:117 , ASP I:149 , ARG I:150 , ARG I:223 , GLU I:275 , ARG I:292 , ASN I:294 , ARG I:374 , TYR I:409 , HOH I:2018
BINDING SITE FOR RESIDUE G39 I 1
05
DC4
SOFTWARE
PRO J:83 , ASN J:284
BINDING SITE FOR RESIDUE NAG J 900
06
DC5
SOFTWARE
ASP J:293 , THR J:297 , ASP J:324 , GLY J:344 , GLY J:346
BINDING SITE FOR RESIDUE CA J 1000
07
DC6
SOFTWARE
ARG J:116 , GLU J:117 , ASP J:149 , ARG J:150 , ARG J:223 , GLU J:275 , ARG J:292 , ARG J:374 , TYR J:409 , HOH J:2018 , HOH J:2051
BINDING SITE FOR RESIDUE G39 J 1
08
DC7
SOFTWARE
PRO K:83 , ASN K:284
BINDING SITE FOR RESIDUE NAG K 900
09
DC8
SOFTWARE
ASP K:293 , THR K:297 , ASP K:324 , GLY K:344 , GLY K:346
BINDING SITE FOR RESIDUE CA K 1000
10
DC9
SOFTWARE
ARG K:116 , GLU K:117 , ASP K:149 , ARG K:150 , ARG K:223 , GLU K:275 , ARG K:292 , ARG K:374 , TYR K:409 , HOH K:2018 , HOH K:2051
BINDING SITE FOR RESIDUE G39 K 1
11
EC1
SOFTWARE
PRO L:83 , ASN L:284
BINDING SITE FOR RESIDUE NAG L 900
12
EC2
SOFTWARE
ASP L:293 , THR L:297 , ASP L:324 , GLY L:344 , GLY L:346
BINDING SITE FOR RESIDUE CA L 1000
13
EC3
SOFTWARE
ARG L:116 , GLU L:117 , ASP L:149 , ARG L:150 , ARG L:223 , GLU L:275 , ARG L:292 , ARG L:374 , TYR L:409 , HOH L:2018 , HOH L:2051
BINDING SITE FOR RESIDUE G39 L 1
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
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;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 16)
Info
All SCOP Domains
1a: SCOP_d3k3aa_ (A:)
1b: SCOP_d3k3ab_ (B:)
1c: SCOP_d3k3ac_ (C:)
1d: SCOP_d3k3ad_ (D:)
1e: SCOP_d3k3ae_ (E:)
1f: SCOP_d3k3af_ (F:)
1g: SCOP_d3k3ag_ (G:)
1h: SCOP_d3k3ah_ (H:)
1i: SCOP_d3k3ai_ (I:)
1j: SCOP_d3k3aj_ (J:)
1k: SCOP_d3k3ak_ (K:)
1l: SCOP_d3k3al_ (L:)
1m: SCOP_d3k3am_ (M:)
1n: SCOP_d3k3an_ (N:)
1o: SCOP_d3k3ao_ (O:)
1p: SCOP_d3k3ap_ (P:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Sialidases (neuraminidases)
(178)
Protein domain
:
Influenza neuraminidase
(78)
Influenza B virus, different strains [TaxId: 11520]
(17)
1a
d3k3aa_
A:
1b
d3k3ab_
B:
1c
d3k3ac_
C:
1d
d3k3ad_
D:
1e
d3k3ae_
E:
1f
d3k3af_
F:
1g
d3k3ag_
G:
1h
d3k3ah_
H:
1i
d3k3ai_
I:
1j
d3k3aj_
J:
1k
d3k3ak_
K:
1l
d3k3al_
L:
1m
d3k3am_
M:
1n
d3k3an_
N:
1o
d3k3ao_
O:
1p
d3k3ap_
P:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(1, 16)
Info
all PFAM domains
1a: PFAM_Neur_3k3aP01 (P:78-466)
1b: PFAM_Neur_3k3aP02 (P:78-466)
1c: PFAM_Neur_3k3aP03 (P:78-466)
1d: PFAM_Neur_3k3aP04 (P:78-466)
1e: PFAM_Neur_3k3aP05 (P:78-466)
1f: PFAM_Neur_3k3aP06 (P:78-466)
1g: PFAM_Neur_3k3aP07 (P:78-466)
1h: PFAM_Neur_3k3aP08 (P:78-466)
1i: PFAM_Neur_3k3aP09 (P:78-466)
1j: PFAM_Neur_3k3aP10 (P:78-466)
1k: PFAM_Neur_3k3aP11 (P:78-466)
1l: PFAM_Neur_3k3aP12 (P:78-466)
1m: PFAM_Neur_3k3aP13 (P:78-466)
1n: PFAM_Neur_3k3aP14 (P:78-466)
1o: PFAM_Neur_3k3aP15 (P:78-466)
1p: PFAM_Neur_3k3aP16 (P:78-466)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Sialidase
(56)
Family
:
Neur
(42)
Influenza B virus (B/Perth/211/2001)
(5)
1a
Neur-3k3aP01
P:78-466
1b
Neur-3k3aP02
P:78-466
1c
Neur-3k3aP03
P:78-466
1d
Neur-3k3aP04
P:78-466
1e
Neur-3k3aP05
P:78-466
1f
Neur-3k3aP06
P:78-466
1g
Neur-3k3aP07
P:78-466
1h
Neur-3k3aP08
P:78-466
1i
Neur-3k3aP09
P:78-466
1j
Neur-3k3aP10
P:78-466
1k
Neur-3k3aP11
P:78-466
1l
Neur-3k3aP12
P:78-466
1m
Neur-3k3aP13
P:78-466
1n
Neur-3k3aP14
P:78-466
1o
Neur-3k3aP15
P:78-466
1p
Neur-3k3aP16
P:78-466
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]
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Asymmetric Unit 1
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