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3K39
Asym. Unit
Info
Asym.Unit (1002 KB)
Biol.Unit 1 (257 KB)
Biol.Unit 2 (260 KB)
Biol.Unit 3 (259 KB)
Biol.Unit 4 (258 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF B/PERTH NEURAMINIDASE D197E MUTANT IN COMPLEX WITH PERAMIVIR
Authors
:
A. J. Oakley, J. L. Mckimm-Breschkin
Date
:
02 Oct 09 (Deposition) - 01 Sep 10 (Release) - 15 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.54
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Biol. Unit 4: M,N,O,P (1x)
Keywords
:
Influenza, Neuraminidase, Mutation, Resistance, Biocryst, Peramivir, Rwj-270201, Bcx-1812, 229614-55-5, 229615-12-7, Hydrolase, Cell Membrane, Glycosidase, Membrane, Transmembrane, Virion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. J. Oakley, S. Barrett, T. S. Peat, J. Newman, V. A. Streltsov, L. Waddington, T. Saito, M. Tashiro, J. L. Mckimm-Breschkin
Structural And Functional Basis Of Resistance To Neuraminidase Inhibitors Of Influenza B Viruses.
J. Med. Chem. 2010
[
close entry info
]
Hetero Components
(4, 52)
Info
All Hetero Components
1a: 3-(1-ACETYLAMINO-2-ETHYL-BUTYL)-4-... (BCZa)
1b: 3-(1-ACETYLAMINO-2-ETHYL-BUTYL)-4-... (BCZb)
1c: 3-(1-ACETYLAMINO-2-ETHYL-BUTYL)-4-... (BCZc)
1d: 3-(1-ACETYLAMINO-2-ETHYL-BUTYL)-4-... (BCZd)
1e: 3-(1-ACETYLAMINO-2-ETHYL-BUTYL)-4-... (BCZe)
1f: 3-(1-ACETYLAMINO-2-ETHYL-BUTYL)-4-... (BCZf)
1g: 3-(1-ACETYLAMINO-2-ETHYL-BUTYL)-4-... (BCZg)
1h: 3-(1-ACETYLAMINO-2-ETHYL-BUTYL)-4-... (BCZh)
1i: 3-(1-ACETYLAMINO-2-ETHYL-BUTYL)-4-... (BCZi)
1j: 3-(1-ACETYLAMINO-2-ETHYL-BUTYL)-4-... (BCZj)
1k: 3-(1-ACETYLAMINO-2-ETHYL-BUTYL)-4-... (BCZk)
1l: 3-(1-ACETYLAMINO-2-ETHYL-BUTYL)-4-... (BCZl)
1m: 3-(1-ACETYLAMINO-2-ETHYL-BUTYL)-4-... (BCZm)
1n: 3-(1-ACETYLAMINO-2-ETHYL-BUTYL)-4-... (BCZn)
1o: 3-(1-ACETYLAMINO-2-ETHYL-BUTYL)-4-... (BCZo)
1p: 3-(1-ACETYLAMINO-2-ETHYL-BUTYL)-4-... (BCZp)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
2i: CALCIUM ION (CAi)
2j: CALCIUM ION (CAj)
2k: CALCIUM ION (CAk)
2l: CALCIUM ION (CAl)
2m: CALCIUM ION (CAm)
2n: CALCIUM ION (CAn)
2o: CALCIUM ION (CAo)
2p: CALCIUM ION (CAp)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4a: YTTRIUM (III) ION (YT3a)
4b: YTTRIUM (III) ION (YT3b)
4c: YTTRIUM (III) ION (YT3c)
4d: YTTRIUM (III) ION (YT3d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCZ
16
Ligand/Ion
3-(1-ACETYLAMINO-2-ETHYL-BUTYL)-4-GUANIDINO-2-HYDROXY-CYCLOPENTANECARBOXYLIC ACID
2
CA
16
Ligand/Ion
CALCIUM ION
3
NAG
16
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
YT3
4
Ligand/Ion
YTTRIUM (III) ION
[
close Hetero Component info
]
Sites
(52, 52)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:83 , ASN A:284
BINDING SITE FOR RESIDUE NAG A 900
02
AC2
SOFTWARE
ASP A:293 , THR A:297 , ASP A:324 , GLY A:344 , GLY A:346
BINDING SITE FOR RESIDUE CA A 1000
03
AC3
SOFTWARE
ARG A:116 , GLU A:117 , ASP A:149 , ARG A:150 , ARG A:154 , TRP A:177 , ARG A:223 , GLU A:226 , GLU A:275 , ARG A:292 , ARG A:374 , TYR A:409 , HOH A:2058
BINDING SITE FOR RESIDUE BCZ A 1001
04
AC4
SOFTWARE
GLU A:168 , GLU B:168 , GLU C:168 , HOH C:2007 , HOH C:2013 , HOH C:2014 , HOH C:2017 , GLU D:168
BINDING SITE FOR RESIDUE YT3 A 1
05
AC5
SOFTWARE
PRO B:83 , ASN B:284
BINDING SITE FOR RESIDUE NAG B 900
06
AC6
SOFTWARE
ASP B:293 , THR B:297 , ASP B:324 , GLY B:344 , GLY B:346
BINDING SITE FOR RESIDUE CA B 1000
07
AC7
SOFTWARE
ARG B:116 , GLU B:117 , ASP B:149 , ARG B:150 , TRP B:177 , ARG B:223 , GLU B:226 , GLU B:275 , GLU B:276 , ARG B:292 , ARG B:374 , TYR B:409 , HOH B:2058
BINDING SITE FOR RESIDUE BCZ B 1001
08
AC8
SOFTWARE
PRO C:83 , ASN C:284
BINDING SITE FOR RESIDUE NAG C 900
09
AC9
SOFTWARE
ASP C:293 , THR C:297 , ASP C:324 , GLY C:344 , GLY C:346
BINDING SITE FOR RESIDUE CA C 1000
10
BC1
SOFTWARE
ARG C:116 , GLU C:117 , ASP C:149 , ARG C:150 , ARG C:154 , TRP C:177 , ARG C:223 , GLU C:226 , GLU C:275 , GLU C:276 , ARG C:292 , ARG C:374 , TYR C:409 , HOH C:2058
BINDING SITE FOR RESIDUE BCZ C 1001
11
BC2
SOFTWARE
PRO D:83 , ASN D:284
BINDING SITE FOR RESIDUE NAG D 900
12
BC3
SOFTWARE
ASP D:293 , THR D:297 , ASP D:324 , GLY D:344 , GLY D:346
BINDING SITE FOR RESIDUE CA D 1000
13
BC4
SOFTWARE
ARG D:116 , GLU D:117 , ASP D:149 , ARG D:150 , ARG D:154 , TRP D:177 , ARG D:223 , GLU D:226 , GLU D:275 , ARG D:292 , ARG D:374 , TYR D:409 , HOH D:2058
BINDING SITE FOR RESIDUE BCZ D 1001
14
BC5
SOFTWARE
GLU E:168 , HOH E:2007 , HOH E:2068 , HOH E:2069 , HOH E:2070 , GLU F:168 , GLU G:168 , GLU H:168
BINDING SITE FOR RESIDUE YT3 E 2
15
BC6
SOFTWARE
PRO E:83 , ASN E:284
BINDING SITE FOR RESIDUE NAG E 900
16
BC7
SOFTWARE
ASP E:293 , THR E:297 , ASP E:324 , GLY E:344 , GLY E:346
BINDING SITE FOR RESIDUE CA E 1000
17
BC8
SOFTWARE
ARG E:116 , GLU E:117 , ASP E:149 , ARG E:150 , ARG E:154 , TRP E:177 , ARG E:223 , GLU E:226 , GLU E:275 , GLU E:276 , ARG E:292 , ARG E:374 , TYR E:409 , HOH E:2058
BINDING SITE FOR RESIDUE BCZ E 1001
18
BC9
SOFTWARE
PRO F:83 , ASN F:284
BINDING SITE FOR RESIDUE NAG F 900
19
CC1
SOFTWARE
ASP F:293 , THR F:297 , ASP F:324 , GLY F:344 , GLY F:346
BINDING SITE FOR RESIDUE CA F 1000
20
CC2
SOFTWARE
ARG F:116 , GLU F:117 , ASP F:149 , ARG F:150 , ARG F:154 , TRP F:177 , ARG F:223 , GLU F:226 , GLU F:275 , ARG F:292 , ARG F:374 , TYR F:409 , HOH F:2058
BINDING SITE FOR RESIDUE BCZ F 1001
21
CC3
SOFTWARE
PRO G:83 , ASN G:284
BINDING SITE FOR RESIDUE NAG G 900
22
CC4
SOFTWARE
ASP G:293 , THR G:297 , ASP G:324 , GLY G:344 , GLY G:346
BINDING SITE FOR RESIDUE CA G 1000
23
CC5
SOFTWARE
ARG G:116 , GLU G:117 , ASP G:149 , ARG G:150 , TRP G:177 , ARG G:223 , GLU G:226 , GLU G:275 , ARG G:292 , ARG G:374 , TYR G:409 , HOH G:2058
BINDING SITE FOR RESIDUE BCZ G 1001
24
CC6
SOFTWARE
PRO H:83 , ASN H:284
BINDING SITE FOR RESIDUE NAG H 900
25
CC7
SOFTWARE
ASP H:293 , THR H:297 , ASP H:324 , GLY H:344 , GLY H:346
BINDING SITE FOR RESIDUE CA H 1000
26
CC8
SOFTWARE
ARG H:116 , GLU H:117 , ASP H:149 , ARG H:150 , TRP H:177 , ARG H:223 , GLU H:226 , GLU H:275 , GLU H:276 , ARG H:292 , ARG H:374 , TYR H:409 , HOH H:2058
BINDING SITE FOR RESIDUE BCZ H 1001
27
CC9
SOFTWARE
GLU I:168 , GLU J:168 , HOH J:2007 , GLU K:168 , GLU L:168 , HOH L:2007 , HOH L:2013 , HOH L:2014
BINDING SITE FOR RESIDUE YT3 I 3
28
DC1
SOFTWARE
PRO I:83 , ASN I:284
BINDING SITE FOR RESIDUE NAG I 900
29
DC2
SOFTWARE
ASP I:293 , THR I:297 , ASP I:324 , GLY I:344 , GLY I:346
BINDING SITE FOR RESIDUE CA I 1000
30
DC3
SOFTWARE
ARG I:116 , GLU I:117 , ASP I:149 , ARG I:150 , ARG I:154 , TRP I:177 , ARG I:223 , GLU I:226 , GLU I:275 , ARG I:292 , ARG I:374 , TYR I:409 , HOH I:2058
BINDING SITE FOR RESIDUE BCZ I 1001
31
DC4
SOFTWARE
PRO J:83 , ASN J:284
BINDING SITE FOR RESIDUE NAG J 900
32
DC5
SOFTWARE
ASP J:293 , THR J:297 , ASP J:324 , GLY J:344 , GLY J:346
BINDING SITE FOR RESIDUE CA J 1000
33
DC6
SOFTWARE
ARG J:116 , GLU J:117 , ASP J:149 , ARG J:150 , TRP J:177 , ARG J:223 , GLU J:226 , GLU J:275 , ARG J:292 , ARG J:374 , TYR J:409 , HOH J:2058
BINDING SITE FOR RESIDUE BCZ J 1001
34
DC7
SOFTWARE
PRO K:83 , ASN K:284
BINDING SITE FOR RESIDUE NAG K 900
35
DC8
SOFTWARE
ASP K:293 , THR K:297 , ASP K:324 , GLY K:344 , GLY K:346
BINDING SITE FOR RESIDUE CA K 1000
36
DC9
SOFTWARE
ARG K:116 , GLU K:117 , ASP K:149 , ARG K:150 , ARG K:154 , TRP K:177 , ARG K:223 , GLU K:226 , GLU K:275 , GLU K:276 , ARG K:292 , ARG K:374 , TYR K:409 , HOH K:2058
BINDING SITE FOR RESIDUE BCZ K 1001
37
EC1
SOFTWARE
PRO L:83 , ASN L:284
BINDING SITE FOR RESIDUE NAG L 900
38
EC2
SOFTWARE
ASP L:293 , THR L:297 , ASP L:324 , GLY L:344 , GLY L:346
BINDING SITE FOR RESIDUE CA L 1000
39
EC3
SOFTWARE
ARG L:116 , GLU L:117 , ASP L:149 , ARG L:150 , ARG L:154 , TRP L:177 , ARG L:223 , GLU L:226 , GLU L:275 , ARG L:292 , ARG L:374 , TYR L:409 , HOH L:2058
BINDING SITE FOR RESIDUE BCZ L 1001
40
EC4
SOFTWARE
GLU M:168 , GLU N:168 , GLU O:168 , HOH O:2007 , HOH O:2013 , HOH O:2014 , HOH O:2017 , GLU P:168
BINDING SITE FOR RESIDUE YT3 M 4
41
EC5
SOFTWARE
PRO M:83 , ASN M:284
BINDING SITE FOR RESIDUE NAG M 900
42
EC6
SOFTWARE
ASP M:293 , THR M:297 , ASP M:324 , GLY M:344 , GLY M:346
BINDING SITE FOR RESIDUE CA M 1000
43
EC7
SOFTWARE
ARG M:116 , ASP M:149 , ARG M:150 , TRP M:177 , ARG M:223 , GLU M:226 , GLU M:275 , ARG M:292 , ARG M:374 , TYR M:409 , HOH M:2058
BINDING SITE FOR RESIDUE BCZ M 1001
44
EC8
SOFTWARE
PRO N:83 , ASN N:284
BINDING SITE FOR RESIDUE NAG N 900
45
EC9
SOFTWARE
ASP N:293 , THR N:297 , ASP N:324 , GLY N:344 , GLY N:346
BINDING SITE FOR RESIDUE CA N 1000
46
FC1
SOFTWARE
ARG N:116 , GLU N:117 , ASP N:149 , ARG N:150 , TRP N:177 , ARG N:223 , GLU N:226 , GLU N:275 , GLU N:276 , ARG N:292 , ARG N:374 , TYR N:409 , HOH N:2058
BINDING SITE FOR RESIDUE BCZ N 1001
47
FC2
SOFTWARE
PRO O:83 , ASN O:284
BINDING SITE FOR RESIDUE NAG O 900
48
FC3
SOFTWARE
ASP O:293 , THR O:297 , ASP O:324 , GLY O:344 , GLY O:346
BINDING SITE FOR RESIDUE CA O 1000
49
FC4
SOFTWARE
ARG O:116 , ASP O:149 , ARG O:150 , ARG O:154 , TRP O:177 , ARG O:223 , GLU O:226 , GLU O:275 , ARG O:292 , ARG O:374 , TYR O:409 , HOH O:2058
BINDING SITE FOR RESIDUE BCZ O 1001
50
FC5
SOFTWARE
PRO P:83 , ASN P:284
BINDING SITE FOR RESIDUE NAG P 900
51
FC6
SOFTWARE
ASP P:293 , THR P:297 , ASP P:324 , GLY P:344 , GLY P:346
BINDING SITE FOR RESIDUE CA P 1000
52
FC7
SOFTWARE
ARG P:116 , GLU P:117 , ASP P:149 , ARG P:150 , TRP P:177 , ARG P:223 , GLU P:226 , GLU P:275 , GLU P:276 , ARG P:292 , ARG P:374 , TYR P:409 , HOH P:2058
BINDING SITE FOR RESIDUE BCZ P 1001
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 16)
Info
All SCOP Domains
1a: SCOP_d3k39a_ (A:)
1b: SCOP_d3k39b_ (B:)
1c: SCOP_d3k39c_ (C:)
1d: SCOP_d3k39d_ (D:)
1e: SCOP_d3k39e_ (E:)
1f: SCOP_d3k39f_ (F:)
1g: SCOP_d3k39g_ (G:)
1h: SCOP_d3k39h_ (H:)
1i: SCOP_d3k39i_ (I:)
1j: SCOP_d3k39j_ (J:)
1k: SCOP_d3k39k_ (K:)
1l: SCOP_d3k39l_ (L:)
1m: SCOP_d3k39m_ (M:)
1n: SCOP_d3k39n_ (N:)
1o: SCOP_d3k39o_ (O:)
1p: SCOP_d3k39p_ (P:)
View:
Select:
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Classes
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)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Sialidases (neuraminidases)
(178)
Protein domain
:
Influenza neuraminidase
(78)
Influenza B virus, different strains [TaxId: 11520]
(17)
1a
d3k39a_
A:
1b
d3k39b_
B:
1c
d3k39c_
C:
1d
d3k39d_
D:
1e
d3k39e_
E:
1f
d3k39f_
F:
1g
d3k39g_
G:
1h
d3k39h_
H:
1i
d3k39i_
I:
1j
d3k39j_
J:
1k
d3k39k_
K:
1l
d3k39l_
L:
1m
d3k39m_
M:
1n
d3k39n_
N:
1o
d3k39o_
O:
1p
d3k39p_
P:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 16)
Info
all PFAM domains
1a: PFAM_Neur_3k39P01 (P:78-466)
1b: PFAM_Neur_3k39P02 (P:78-466)
1c: PFAM_Neur_3k39P03 (P:78-466)
1d: PFAM_Neur_3k39P04 (P:78-466)
1e: PFAM_Neur_3k39P05 (P:78-466)
1f: PFAM_Neur_3k39P06 (P:78-466)
1g: PFAM_Neur_3k39P07 (P:78-466)
1h: PFAM_Neur_3k39P08 (P:78-466)
1i: PFAM_Neur_3k39P09 (P:78-466)
1j: PFAM_Neur_3k39P10 (P:78-466)
1k: PFAM_Neur_3k39P11 (P:78-466)
1l: PFAM_Neur_3k39P12 (P:78-466)
1m: PFAM_Neur_3k39P13 (P:78-466)
1n: PFAM_Neur_3k39P14 (P:78-466)
1o: PFAM_Neur_3k39P15 (P:78-466)
1p: PFAM_Neur_3k39P16 (P:78-466)
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Clans
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Families
(
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(
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Organisms
(
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(
)
Clan
:
Sialidase
(56)
Family
:
Neur
(42)
Influenza B virus (B/Perth/211/2001)
(5)
1a
Neur-3k39P01
P:78-466
1b
Neur-3k39P02
P:78-466
1c
Neur-3k39P03
P:78-466
1d
Neur-3k39P04
P:78-466
1e
Neur-3k39P05
P:78-466
1f
Neur-3k39P06
P:78-466
1g
Neur-3k39P07
P:78-466
1h
Neur-3k39P08
P:78-466
1i
Neur-3k39P09
P:78-466
1j
Neur-3k39P10
P:78-466
1k
Neur-3k39P11
P:78-466
1l
Neur-3k39P12
P:78-466
1m
Neur-3k39P13
P:78-466
1n
Neur-3k39P14
P:78-466
1o
Neur-3k39P15
P:78-466
1p
Neur-3k39P16
P:78-466
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain P
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (1002 KB)
Header - Asym.Unit
Biol.Unit 1 (257 KB)
Header - Biol.Unit 1
Biol.Unit 2 (260 KB)
Header - Biol.Unit 2
Biol.Unit 3 (259 KB)
Header - Biol.Unit 3
Biol.Unit 4 (258 KB)
Header - Biol.Unit 4
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