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3K38
Biol. Unit 1
Info
Asym.Unit (2.0 MB)
Biol.Unit 1 (630 KB)
Biol.Unit 2 (754 KB)
Biol.Unit 3 (755 KB)
Biol.Unit 4 (630 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF B/PERTH NEURAMINIDASE D197E MUTANT
Authors
:
A. J. Oakley, J. L. Mckimm-Breschkin
Date
:
02 Oct 09 (Deposition) - 01 Sep 10 (Release) - 15 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.19
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: B,E,F,G,H,I (1x)
Biol. Unit 3: B,I,J,K,L,M (1x)
Biol. Unit 4: B,M,N,O,P (1x)
Keywords
:
Influenza, Neuraminidase, Mutation, Resistance, Hydrolase, Cell Membrane, Glycosidase, Membrane, Transmembrane, Virion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. J. Oakley, S. Barrett, T. S. Peat, J. Newman, V. A. Streltsov, L. Waddington, T. Saito, M. Tashiro, J. L. Mckimm-Breschkin
Structural And Functional Basis Of Resistance To Neuraminidase Inhibitors Of Influenza B Viruses.
J. Med. Chem. 2010
[
close entry info
]
Hetero Components
(3, 17)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
1m: CALCIUM ION (CAm)
1n: CALCIUM ION (CAn)
1o: CALCIUM ION (CAo)
1p: CALCIUM ION (CAp)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
2n: N-ACETYL-D-GLUCOSAMINE (NAGn)
2o: N-ACETYL-D-GLUCOSAMINE (NAGo)
2p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
4a: YTTRIUM (III) ION (YT3a)
4b: YTTRIUM (III) ION (YT3b)
4c: YTTRIUM (III) ION (YT3c)
4d: YTTRIUM (III) ION (YT3d)
4e: YTTRIUM (III) ION (YT3e)
4f: YTTRIUM (III) ION (YT3f)
4g: YTTRIUM (III) ION (YT3g)
4h: YTTRIUM (III) ION (YT3h)
4i: YTTRIUM (III) ION (YT3i)
4j: YTTRIUM (III) ION (YT3j)
4k: YTTRIUM (III) ION (YT3k)
4l: YTTRIUM (III) ION (YT3l)
4m: YTTRIUM (III) ION (YT3m)
4n: YTTRIUM (III) ION (YT3n)
4o: YTTRIUM (III) ION (YT3o)
4p: YTTRIUM (III) ION (YT3p)
4q: YTTRIUM (III) ION (YT3q)
4r: YTTRIUM (III) ION (YT3r)
4s: YTTRIUM (III) ION (YT3s)
4t: YTTRIUM (III) ION (YT3t)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
NAG
5
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
SO4
5
Ligand/Ion
SULFATE ION
4
YT3
7
Ligand/Ion
YTTRIUM (III) ION
[
close Hetero Component info
]
Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:83 , ASN A:284
BINDING SITE FOR RESIDUE NAG A 900
02
AC2
SOFTWARE
ASP A:293 , THR A:297 , ASP A:324 , GLY A:344 , GLY A:346
BINDING SITE FOR RESIDUE CA A 1000
03
AC3
SOFTWARE
ARG A:116 , ASP A:149 , ARG A:292 , ARG A:374 , TYR A:409 , YT3 A:1002
BINDING SITE FOR RESIDUE SO4 A 1001
04
AC4
SOFTWARE
ASP A:149 , HOH A:563 , SO4 A:1001
BINDING SITE FOR RESIDUE YT3 A 1002
05
AC5
SOFTWARE
GLU A:168 , HOH A:864 , GLU B:168 , GLU C:168 , GLU D:168
BINDING SITE FOR RESIDUE YT3 A 1
06
AC6
SOFTWARE
PRO B:83 , ASN B:284
BINDING SITE FOR RESIDUE NAG B 900
07
AC7
SOFTWARE
ASP B:293 , THR B:297 , ASP B:324 , GLY B:344 , GLY B:346
BINDING SITE FOR RESIDUE CA B 1000
08
AC8
SOFTWARE
ARG B:116 , ASP B:149 , ARG B:292 , ARG B:374 , TYR B:409 , YT3 B:1002 , HOH B:1264
BINDING SITE FOR RESIDUE SO4 B 1001
09
AC9
SOFTWARE
ASP B:149 , SO4 B:1001 , HOH B:1264
BINDING SITE FOR RESIDUE YT3 B 1002
10
BC1
SOFTWARE
PRO C:83 , ASN C:284 , HOH C:1277
BINDING SITE FOR RESIDUE NAG C 900
11
BC2
SOFTWARE
ASP C:293 , THR C:297 , ASP C:324 , GLY C:344 , GLY C:346
BINDING SITE FOR RESIDUE CA C 1000
12
BC3
SOFTWARE
ARG C:116 , ASP C:149 , ARG C:292 , ARG C:374 , TYR C:409 , YT3 C:1002
BINDING SITE FOR RESIDUE SO4 C 1001
13
BC4
SOFTWARE
ASP C:149 , SO4 C:1001
BINDING SITE FOR RESIDUE YT3 C 1002
14
BC5
SOFTWARE
PRO D:83 , ASN D:284
BINDING SITE FOR RESIDUE NAG D 900
15
BC6
SOFTWARE
ASP D:293 , THR D:297 , ASP D:324 , GLY D:344 , GLY D:346
BINDING SITE FOR RESIDUE CA D 1000
16
BC7
SOFTWARE
ARG D:116 , ASP D:149 , ARG D:292 , ARG D:374 , TYR D:409 , YT3 D:1002
BINDING SITE FOR RESIDUE SO4 D 1001
17
BC8
SOFTWARE
ASP D:149 , SO4 D:1001
BINDING SITE FOR RESIDUE YT3 D 1002
18
BC9
SOFTWARE
GLU E:168 , GLU F:168 , GLU G:168 , HOH G:1232 , GLU H:168
BINDING SITE FOR RESIDUE YT3 E 2
19
CC1
SOFTWARE
PRO E:83 , ASN E:284
BINDING SITE FOR RESIDUE NAG E 900
20
CC2
SOFTWARE
ASP E:293 , THR E:297 , ASP E:324 , GLY E:344 , GLY E:346
BINDING SITE FOR RESIDUE CA E 1000
21
CC3
SOFTWARE
ARG E:116 , ASP E:149 , ARG E:292 , ARG E:374 , TYR E:409 , HOH E:838 , YT3 E:1002
BINDING SITE FOR RESIDUE SO4 E 1001
22
CC4
SOFTWARE
ASP E:149 , HOH E:838 , HOH E:905 , SO4 E:1001
BINDING SITE FOR RESIDUE YT3 E 1002
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 16)
Info
All SCOP Domains
1a: SCOP_d3k38a_ (A:)
1b: SCOP_d3k38b_ (B:)
1c: SCOP_d3k38c_ (C:)
1d: SCOP_d3k38d_ (D:)
1e: SCOP_d3k38e_ (E:)
1f: SCOP_d3k38f_ (F:)
1g: SCOP_d3k38g_ (G:)
1h: SCOP_d3k38h_ (H:)
1i: SCOP_d3k38i_ (I:)
1j: SCOP_d3k38j_ (J:)
1k: SCOP_d3k38k_ (K:)
1l: SCOP_d3k38l_ (L:)
1m: SCOP_d3k38m_ (M:)
1n: SCOP_d3k38n_ (N:)
1o: SCOP_d3k38o_ (O:)
1p: SCOP_d3k38p_ (P:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Sialidases (neuraminidases)
(178)
Protein domain
:
Influenza neuraminidase
(78)
Influenza B virus, different strains [TaxId: 11520]
(17)
1a
d3k38a_
A:
1b
d3k38b_
B:
1c
d3k38c_
C:
1d
d3k38d_
D:
1e
d3k38e_
E:
1f
d3k38f_
F:
1g
d3k38g_
G:
1h
d3k38h_
H:
1i
d3k38i_
I:
1j
d3k38j_
J:
1k
d3k38k_
K:
1l
d3k38l_
L:
1m
d3k38m_
M:
1n
d3k38n_
N:
1o
d3k38o_
O:
1p
d3k38p_
P:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 16)
Info
all PFAM domains
1a: PFAM_Neur_3k38P01 (P:78-466)
1b: PFAM_Neur_3k38P02 (P:78-466)
1c: PFAM_Neur_3k38P03 (P:78-466)
1d: PFAM_Neur_3k38P04 (P:78-466)
1e: PFAM_Neur_3k38P05 (P:78-466)
1f: PFAM_Neur_3k38P06 (P:78-466)
1g: PFAM_Neur_3k38P07 (P:78-466)
1h: PFAM_Neur_3k38P08 (P:78-466)
1i: PFAM_Neur_3k38P09 (P:78-466)
1j: PFAM_Neur_3k38P10 (P:78-466)
1k: PFAM_Neur_3k38P11 (P:78-466)
1l: PFAM_Neur_3k38P12 (P:78-466)
1m: PFAM_Neur_3k38P13 (P:78-466)
1n: PFAM_Neur_3k38P14 (P:78-466)
1o: PFAM_Neur_3k38P15 (P:78-466)
1p: PFAM_Neur_3k38P16 (P:78-466)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Sialidase
(56)
Family
:
Neur
(42)
Influenza B virus (B/Perth/211/2001)
(5)
1a
Neur-3k38P01
P:78-466
1b
Neur-3k38P02
P:78-466
1c
Neur-3k38P03
P:78-466
1d
Neur-3k38P04
P:78-466
1e
Neur-3k38P05
P:78-466
1f
Neur-3k38P06
P:78-466
1g
Neur-3k38P07
P:78-466
1h
Neur-3k38P08
P:78-466
1i
Neur-3k38P09
P:78-466
1j
Neur-3k38P10
P:78-466
1k
Neur-3k38P11
P:78-466
1l
Neur-3k38P12
P:78-466
1m
Neur-3k38P13
P:78-466
1n
Neur-3k38P14
P:78-466
1o
Neur-3k38P15
P:78-466
1p
Neur-3k38P16
P:78-466
[
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]
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Asym.Unit (2.0 MB)
Header - Asym.Unit
Biol.Unit 1 (630 KB)
Header - Biol.Unit 1
Biol.Unit 2 (754 KB)
Header - Biol.Unit 2
Biol.Unit 3 (755 KB)
Header - Biol.Unit 3
Biol.Unit 4 (630 KB)
Header - Biol.Unit 4
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