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3K36
Asym. Unit
Info
Asym.Unit (140 KB)
Biol.Unit 1 (262 KB)
Biol.Unit 2 (261 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF B/PERTH NEURAMINIDASE
Authors
:
A. J. Oakley, J. L. Mckimm-Breschkin
Date
:
02 Oct 09 (Deposition) - 01 Sep 10 (Release) - 15 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (4x)
Biol. Unit 2: B (4x)
Keywords
:
Influenza, Neuraminidase, Mutation, Resistance, Hydrolase, Cell Membrane, Glycosidase, Membrane, Transmembrane, Virion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. J. Oakley, S. Barrett, T. S. Peat, J. Newman, V. A. Streltsov, L. Waddington, T. Saito, M. Tashiro, J. L. Mckimm-Breschkin
Structural And Functional Basis Of Resistance To Neuraminidase Inhibitors Of Influenza B Viruses.
J. Med. Chem. 2010
[
close entry info
]
Hetero Components
(7, 22)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
5c: ALPHA-D-MANNOSE (MANc)
5d: ALPHA-D-MANNOSE (MANd)
5e: ALPHA-D-MANNOSE (MANe)
5f: ALPHA-D-MANNOSE (MANf)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
7a: SULFATE ION (SO4a)
7b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
CA
2
Ligand/Ion
CALCIUM ION
3
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
4
GOL
4
Ligand/Ion
GLYCEROL
5
MAN
6
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
SO4
2
Ligand/Ion
SULFATE ION
[
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]
Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
NAG A:2 , PRO A:83 , ARG A:84 , ASN A:284 , ARG A:356 , HOH A:489
BINDING SITE FOR RESIDUE NAG A 1
02
AC2
SOFTWARE
NAG A:1 , BMA A:3 , MAN A:4 , MAN A:6 , LEU A:85 , HOH A:489 , TYR B:82
BINDING SITE FOR RESIDUE NAG A 2
03
AC3
SOFTWARE
NAG A:2 , MAN A:4
BINDING SITE FOR RESIDUE BMA A 3
04
AC4
SOFTWARE
NAG A:2 , BMA A:3 , MAN A:5 , MAN A:6 , TRP B:80 , TYR B:82 , GLY B:233 , ARG B:257
BINDING SITE FOR RESIDUE MAN A 4
05
AC5
SOFTWARE
MAN A:4 , ASN B:235 , TYR B:237 , LYS B:255 , VAL B:307
BINDING SITE FOR RESIDUE MAN A 5
06
AC6
SOFTWARE
NAG A:2 , MAN A:4 , GLU B:79
BINDING SITE FOR RESIDUE MAN A 6
07
AC7
SOFTWARE
ARG A:116 , ARG A:292 , ARG A:374 , TYR A:409 , HOH A:565
BINDING SITE FOR RESIDUE SO4 A 467
08
AC8
SOFTWARE
HOH A:62 , CYS A:122 , GLY A:123 , PRO A:124 , LYS A:125 , CYS A:127 , GLU A:208 , LYS A:416
BINDING SITE FOR RESIDUE EDO A 468
09
AC9
SOFTWARE
SER A:370 , THR A:372 , LYS A:373 , HOH A:547 , ASP B:463 , MET B:464 , ALA B:465
BINDING SITE FOR RESIDUE GOL A 469
10
BC1
SOFTWARE
ASP A:293 , THR A:297 , ASP A:324 , GLY A:344 , GLY A:346 , HOH A:529
BINDING SITE FOR RESIDUE CA A 470
11
BC2
SOFTWARE
NAG B:2 , PRO B:83 , LEU B:85 , ASN B:284 , ARG B:356 , HOH B:539
BINDING SITE FOR RESIDUE NAG B 1
12
BC3
SOFTWARE
TYR A:82 , NAG B:1 , BMA B:3 , MAN B:4 , LEU B:85 , HOH B:539
BINDING SITE FOR RESIDUE NAG B 2
13
BC4
SOFTWARE
NAG B:2 , MAN B:4 , MAN B:5
BINDING SITE FOR RESIDUE BMA B 3
14
BC5
SOFTWARE
TRP A:80 , TYR A:82 , GLY A:233 , ASN A:235 , ARG A:257 , NAG B:2 , BMA B:3 , MAN B:5 , MAN B:6
BINDING SITE FOR RESIDUE MAN B 4
15
BC6
SOFTWARE
ILE A:232 , ASN A:235 , LYS A:255 , VAL A:307 , HOH A:520 , BMA B:3 , MAN B:4
BINDING SITE FOR RESIDUE MAN B 5
16
BC7
SOFTWARE
GLU A:79 , MAN B:4
BINDING SITE FOR RESIDUE MAN B 6
17
BC8
SOFTWARE
ARG B:116 , ARG B:292 , ARG B:374 , TYR B:409
BINDING SITE FOR RESIDUE SO4 B 467
18
BC9
SOFTWARE
VAL B:399 , LEU B:454 , LEU B:455
BINDING SITE FOR RESIDUE EDO B 468
19
CC1
SOFTWARE
TYR B:214 , HIS B:215 , SER B:216 , TYR B:217
BINDING SITE FOR RESIDUE GOL B 469
20
CC2
SOFTWARE
CYS B:122 , GLY B:123 , PRO B:124 , CYS B:127 , GLU B:208 , ILE B:415 , LYS B:416 , HOH B:563
BINDING SITE FOR RESIDUE GOL B 470
21
CC3
SOFTWARE
ASP A:463 , MET A:464 , ALA A:465 , SER B:370 , LYS B:371 , THR B:372 , LYS B:373 , HOH B:535
BINDING SITE FOR RESIDUE GOL B 471
22
CC4
SOFTWARE
ASP B:293 , THR B:297 , ASP B:324 , GLY B:344 , GLY B:346
BINDING SITE FOR RESIDUE CA B 472
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3k36a_ (A:)
1b: SCOP_d3k36b_ (B:)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Sialidases (neuraminidases)
(178)
Protein domain
:
Influenza neuraminidase
(78)
Influenza B virus, different strains [TaxId: 11520]
(17)
1a
d3k36a_
A:
1b
d3k36b_
B:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Neur_3k36B01 (B:78-466)
1b: PFAM_Neur_3k36B02 (B:78-466)
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Clans
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Organisms
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)
Clan
:
Sialidase
(56)
Family
:
Neur
(42)
Influenza B virus (B/Perth/211/2001)
(5)
1a
Neur-3k36B01
B:78-466
1b
Neur-3k36B02
B:78-466
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]
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (140 KB)
Header - Asym.Unit
Biol.Unit 1 (262 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 2
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