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Getting 'Exon' information from database.
3IYP
Asym. Unit
Info
Asym.Unit (179 KB)
Biol.Unit 1, α-C (9.9 MB)
Biol.Unit 1 (9.9 MB)
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(1)
Title
:
THE INTERACTION OF DECAY-ACCELERATING FACTOR WITH ECHOVIRUS 7
Authors
:
P. Plevka, S. Hafenstein, Y. Zhang, K. G. Harris, J. O. Cifuente, V. D. Bo P. R. Chipman, F. Lin, D. E. Medof, C. M. Bator, M. G. Rossmann
Date
:
07 Apr 10 (Deposition) - 24 Nov 10 (Release) - 09 Nov 16 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
7.20
Chains
:
Asym. Unit : A,B,C,D,F
Biol. Unit 1: A,B,C,D,F (60x)
Keywords
:
Virus, Receptor, Complex, Echovirus, Daf, Icosahedral Virus
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Plevka, S. Hafenstein, K. G. Harris, J. O. Cifuente, Y. Zhang, V. D. Bowman, P. R. Chipman, C. M. Bator, F. Lin, M. E. Medof, M. G. Rossmann
Interaction Of Decay-Accelerating Factor With Echovirus 7.
J. Virol. V. 84 12665 2010
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: LAURIC ACID (DAOa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DAO
1
Ligand/Ion
LAURIC ACID
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:95 , PHE A:107 , MET A:117 , TYR A:146 , MET A:181 , ILE A:183 , ASN A:194 , TYR A:210 , MET A:216
BINDING SITE FOR RESIDUE DAO A 1289
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_001997 (R20L, chain F, )
2: VAR_001998 (R20P, chain F, )
3: VAR_001999 (L50R, chain F, )
4: VAR_002000 (S167L, chain F, )
5: VAR_002001 (A195P, chain F, )
6: VAR_015884 (R208H, chain F, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_001997
R
52
L
DAF_HUMAN
Polymorphism
28371588
F
R
20
L
2
UniProt
VAR_001998
R
52
P
DAF_HUMAN
Polymorphism
28371588
F
R
20
P
3
UniProt
VAR_001999
L
82
R
DAF_HUMAN
Polymorphism
147474393
F
L
50
R
4
UniProt
VAR_002000
S
199
L
DAF_HUMAN
Polymorphism
56283594
F
S
167
L
5
UniProt
VAR_002001
A
227
P
DAF_HUMAN
Polymorphism
60822373
F
A
195
P
6
UniProt
VAR_015884
R
240
H
DAF_HUMAN
Polymorphism
---
F
R
208
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: SUSHI (F:64-128|F:3-62|F:129-190|F:191-25...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
DAF_HUMAN
96-160
34-94
161-222
223-285
4
F:64-128
F:3-62
F:129-190
F:191-253
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Exons
(7, 7)
Info
All Exons
Exon 1.1a (F:2-2)
Exon 1.3 (F:2-64)
Exon 1.4b (F:64-128)
Exon 1.5 (F:128-161)
Exon 1.6 (F:161-190)
Exon 1.7 (F:190-253)
Exon 1.8b (F:253-253)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.3
3: Boundary 1.3/1.4b
4: Boundary 1.4b/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8b
8: Boundary 1.8b/1.8d
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000367064
1a
ENSE00001840627
chr1:
207494853-207495210
358
DAF_HUMAN
1-34
34
1
F:2-2
1
1.3
ENST00000367064
3
ENSE00001443405
chr1:
207495727-207495912
186
DAF_HUMAN
34-96
63
1
F:2-64
63
1.4b
ENST00000367064
4b
ENSE00001443404
chr1:
207497904-207498095
192
DAF_HUMAN
96-160
65
1
F:64-128
65
1.5
ENST00000367064
5
ENSE00001069638
chr1:
207498967-207499066
100
DAF_HUMAN
160-193
34
1
F:128-161
34
1.6
ENST00000367064
6
ENSE00001069637
chr1:
207500097-207500182
86
DAF_HUMAN
193-222
30
1
F:161-190
30
1.7
ENST00000367064
7
ENSE00000960173
chr1:
207504453-207504641
189
DAF_HUMAN
222-285
64
1
F:190-253
64
1.8b
ENST00000367064
8b
ENSE00001041396
chr1:
207510038-207510163
126
DAF_HUMAN
285-327
43
1
F:253-253
1
1.8d
ENST00000367064
8d
ENSE00001253047
chr1:
207510674-207510754
81
DAF_HUMAN
327-354
28
0
-
-
1.9
ENST00000367064
9
ENSE00001432766
chr1:
207512742-207512762
21
DAF_HUMAN
354-361
8
0
-
-
1.15f
ENST00000367064
15f
ENSE00001631743
chr1:
207532891-207534311
1421
DAF_HUMAN
361-381
21
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (179 KB)
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