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3IV8
Biol. Unit 1
Info
Asym.Unit (240 KB)
Biol.Unit 1 (122 KB)
Biol.Unit 2 (117 KB)
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(1)
Title
:
N-ACETYLGLUCOSAMINE-6-PHOSPHATE DEACETYLASE FROM VIBRIO CHOLERAE COMPLEXED WITH FRUCTOSE 6-PHOSPHATE
Authors
:
J. Osipiuk, N. Maltseva, J. Stam, W. F. Anderson, A. Joachimiak, Center Structural Genomics Of Infectious Diseases (Csgid)
Date
:
31 Aug 09 (Deposition) - 08 Sep 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.53
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Idp01334, N-Acetylglucosamine-6-Phosphate Deacetylase, Fructose 6- Phosphate, Carbohydrate Metabolism, Hydrolase, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid
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Reference
:
J. Osipiuk, N. Maltseva, J. Stam, W. F. Anderson, A. Joachimiak
X-Ray Crystal Structure Of N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio Cholerae Complexed With Fructose 6-Phosphate.
To Be Published
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: FRUCTOSE-6-PHOSPHATE (F6Pa)
2a: NICKEL (II) ION (NIa)
2b: NICKEL (II) ION (NIb)
2c: NICKEL (II) ION (NIc)
2d: NICKEL (II) ION (NId)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
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No.
Name
Count
Type
Full Name
1
F6P
1
Ligand/Ion
FRUCTOSE-6-PHOSPHATE
2
NI
-1
Ligand/Ion
NICKEL (II) ION
3
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC4 (SOFTWARE)
4: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:138 , ILE A:139 , HIS A:192 , PHE A:215 , ASN A:216 , ALA A:217 , HIS A:248 , ASP A:270 , THR A:302 , LEU A:303 , NI A:501 , ARG C:224
BINDING SITE FOR RESIDUE F6P A 500
2
AC2
SOFTWARE
GLU A:128 , HIS A:192 , HIS A:213 , F6P A:500
BINDING SITE FOR RESIDUE NI A 501
3
AC4
SOFTWARE
GLU C:128 , HIS C:192 , HIS C:213 , HOH C:448
BINDING SITE FOR RESIDUE NI C 501
4
AC7
SOFTWARE
ARG A:224 , HOH A:434 , ASN C:216 , ALA C:217
BINDING SITE FOR RESIDUE SO4 A 702
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_3iv8A02 (A:55-277,A:278-341)
1b: CATH_3iv8B02 (B:55-277,B:278-341)
1c: CATH_3iv8C02 (C:55-277,C:278-341)
1d: CATH_3iv8D02 (D:55-342)
2a: CATH_3iv8A01 (A:0-54,A:342-378)
2b: CATH_3iv8B01 (B:0-54,B:342-378)
2c: CATH_3iv8C01 (C:0-54,C:342-378)
2d: CATH_3iv8D01 (D:0-54,D:343-378)
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Metal-dependent hydrolases
(190)
Vibrio cholerae. Organism_taxid: 666. Strain: o1 biovar el tor str. N16961.
(1)
1a
3iv8A02
A:55-277,A:278-341
1b
3iv8B02
B:55-277,B:278-341
1c
3iv8C02
C:55-277,C:278-341
1d
3iv8D02
D:55-342
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Urease, subunit C; domain 1
(95)
Homologous Superfamily
:
Urease, subunit C, domain 1
(95)
Vibrio cholerae. Organism_taxid: 666. Strain: o1 biovar el tor str. N16961.
(1)
2a
3iv8A01
A:0-54,A:342-378
2b
3iv8B01
B:0-54,B:342-378
2c
3iv8C01
C:0-54,C:342-378
2d
3iv8D01
D:0-54,D:343-378
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (240 KB)
Header - Asym.Unit
Biol.Unit 1 (122 KB)
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