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3IS9
Asym. Unit
Info
Asym.Unit (171 KB)
Biol.Unit 1 (166 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HIV-1 REVERSE TRANSCRIPTASE (RT) IN COMPLEX WITH THE ALKENYLDIARYLMETHANE (ADAM) NON-NUCLEOSIDE RT INHIBITOR DIMETHYL 3,3'-(6-METHOXY-6-OXOHEX-1-ENE-1,1-DIYL)BIS(5-CYANO-6-METHOXYBENZOATE).
Authors
:
W. C. Ho, J. D. Bauman, K. Das, E. Arnold
Date
:
25 Aug 09 (Deposition) - 07 Apr 10 (Release) - 07 Apr 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Nnrti, Nonnucleoside Inhibitor, Aids, Hiv, P51/P66, Adam, Aspartyl Protease, Cell Membrane, Cytoplasm, Dna Integration, Dna Recombination, Dna-Directed Dna Polymerase, Endonuclease, Hydrolase, Lipoprotein, Membrane, Metal-Binding, Multifunctional Enzyme, Myristate, Nuclease, Nucleotidyltransferase, Nucleus, Phosphoprotein, Protease, Rna-Binding, Rna-Directed Dna Polymerase, Transferase, Viral Nucleoprotein, Virion, Zinc, Zinc-Finger, Transferase-Hydrolase Complex
(Keyword Search:
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Reference
:
M. D. Cullen, W. C. Ho, J. D. Bauman, K. Das, E. Arnold, T. L. Hartman, K. M. Watson, R. W. Buckheit, C. Pannecouque, E. De Clercq, M. Cushman
Crystallographic Study Of A Novel Subnanomolar Inhibitor Provides Insight On The Binding Interactions Of Alkenyldiarylmethanes With Human Immunodeficiency Virus-1 Reverse Transcriptase.
J. Med. Chem. V. 52 6467 2009
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: DIMETHYL 3,3'-(6-METHOXY-6-OXOHEX-... (AC7a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
AC7
1
Ligand/Ion
DIMETHYL 3,3'-(6-METHOXY-6-OXOHEX-1-ENE-1,1-DIYL)BIS(5-CYANO-6-METHOXYBENZOATE)
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:100 , LYS A:101 , VAL A:106 , TYR A:181 , TYR A:188 , LYS A:223 , PHE A:227 , LEU A:228 , TRP A:229 , LEU A:234 , HIS A:235 , TYR A:318
BINDING SITE FOR RESIDUE AC7 A 556
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SAPs(SNPs)/Variants
(5, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_POL_HV1B1_003 (A172R, chain A/B, )
2: VAR_POL_HV1B1_004 (K451R, chain A, )
3: VAR_POL_HV1B1_005 (V458L, chain A, )
4: VAR_POL_HV1B1_006 (K512Q, chain A, )
5: VAR_POL_HV1B1_007 (E529Q, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_POL_HV1B1_003
*
K
771
R
POL_HV1B1
---
---
A/B
A
172
R
2
UniProt
VAR_POL_HV1B1_004
*
K
1050
R
POL_HV1B1
---
---
A
K
451
R
3
UniProt
VAR_POL_HV1B1_005
*
V
1057
L
POL_HV1B1
---
---
A
V
458
L
4
UniProt
VAR_POL_HV1B1_006
*
K
1111
Q
POL_HV1B1
---
---
A
K
512
Q
5
UniProt
VAR_POL_HV1B1_007
*
E
1128
Q
POL_HV1B1
---
---
A
E
529
Q
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: RT_POL (A:44-234,B:44-234)
2: RNASE_H (A:434-554)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RT_POL
PS50878
Reverse transcriptase (RT) catalytic domain profile.
POL_HV1B1
643-833
2
A:44-234
B:44-234
2
RNASE_H
PS50879
RNase H domain profile.
POL_HV1B1
1033-1156
1
A:434-554
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d3is9a2 (A:430-554)
2a: SCOP_d3is9a1 (A:1-429)
2b: SCOP_d3is9b_ (B:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Ribonuclease H-like
(775)
Family
:
automated matches
(127)
Protein domain
:
automated matches
(127)
Human immunodeficiency virus type 1 bh10 [TaxId: 11678]
(12)
1a
d3is9a2
A:430-554
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
Reverse transcriptase
(217)
Protein domain
:
HIV-1 reverse transcriptase
(161)
Human immunodeficiency virus type 1 [TaxId: 11676]
(138)
2a
d3is9a1
A:1-429
2b
d3is9b_
B:
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CATH Domains
(3, 9)
Info
all CATH domains
1a: CATH_3is9B02 (B:99-123,B:165-233)
1b: CATH_3is9A03 (A:226-319)
1c: CATH_3is9B03 (B:234-319)
1d: CATH_3is9A04 (A:320-426)
1e: CATH_3is9B04 (B:320-427)
1f: CATH_3is9A02 (A:91-115,A:157-225)
2a: CATH_3is9A05 (A:427-554)
3a: CATH_3is9A01 (A:1-90,A:116-156)
3b: CATH_3is9B01 (B:9-98,B:124-164)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.270, no name defined]
(278)
Hiv-1 (Human immunodeficiency virus type 1 bh10)
(5)
1a
3is9B02
B:99-123,B:165-233
1b
3is9A03
A:226-319
1c
3is9B03
B:234-319
1d
3is9A04
A:320-426
1e
3is9B04
B:320-427
1f
3is9A02
A:91-115,A:157-225
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.10, no name defined]
(372)
Hiv-1 (Human immunodeficiency virus type 1 bh10)
(5)
2a
3is9A05
A:427-554
Architecture
:
Roll
(3276)
Topology
:
HIV Type 1 Reverse Transcriptase; Chain A, domain 1
(164)
Homologous Superfamily
:
HIV Type 1 Reverse Transcriptase, subunit A, domain 1
(164)
Hiv-1 (Human immunodeficiency virus type 1 bh10)
(5)
3a
3is9A01
A:1-90,A:116-156
3b
3is9B01
B:9-98,B:124-164
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (171 KB)
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