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3IQL
Asym. Unit
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Asym.Unit (60 KB)
Biol.Unit 1 (28 KB)
Biol.Unit 2 (29 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE RAT ENDOPHILIN-A1 SH3 DOMAIN
Authors
:
J. F. Trempe, G. Kozlov, E. M. Camacho, K. Gehring
Date
:
20 Aug 09 (Deposition) - 10 Nov 09 (Release) - 26 Jan 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Sh3, Endophilin, Coiled Coil, Cytoplasm, Endocytosis, Lipid- Binding, Membrane, Phosphoprotein, Sh3 Domain, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. F. Trempe, C. X. Chen, K. Grenier, E. M. Camacho, G. Kozlov, P. S. Mcpherson, K. Gehring, E. A. Fon
Sh3 Domains From A Subset Of Bar Proteins Define A Ubl-Binding Domain And Implicate Parkin In Synaptic Ubiquitination.
Mol. Cell V. 36 1034 2009
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
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Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:352 , HOH B:168 , GLU B:302 , LYS B:312 , GLU B:345 , ILE B:346
BINDING SITE FOR RESIDUE CL A 1
2
AC2
SOFTWARE
GLU A:302 , LYS A:312 , GLU A:345 , ILE A:346 , HIS B:352
BINDING SITE FOR RESIDUE CL B 2
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SH3 (A:291-349,B:291-349)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH3
PS50002
Src homology 3 (SH3) domain profile.
SH3G2_RAT
290-349
2
A:291-349
B:291-349
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Exons
(1, 2)
Info
All Exons
Exon 1.9 (A:287-338 | B:286-338)
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All Exon Boundaries
1: Boundary 1.8/1.9
2: Boundary 1.9/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENSRNOT00000008999
2a
ENSRNOE00000436067
chr5:
104268400-104268471
72
SH3G2_RAT
1-24
24
0
-
-
1.3
ENSRNOT00000008999
3
ENSRNOE00000457989
chr5:
104276496-104276568
73
SH3G2_RAT
25-49
25
0
-
-
1.4
ENSRNOT00000008999
4
ENSRNOE00000062036
chr5:
104295141-104295284
144
SH3G2_RAT
49-97
49
0
-
-
1.5a
ENSRNOT00000008999
5a
ENSRNOE00000062149
chr5:
104296193-104296326
134
SH3G2_RAT
97-141
45
0
-
-
1.6
ENSRNOT00000008999
6
ENSRNOE00000062311
chr5:
104298663-104298821
159
SH3G2_RAT
142-194
53
0
-
-
1.7
ENSRNOT00000008999
7
ENSRNOE00000062475
chr5:
104300776-104300879
104
SH3G2_RAT
195-229
35
0
-
-
1.8
ENSRNOT00000008999
8
ENSRNOE00000062624
chr5:
104305039-104305169
131
SH3G2_RAT
229-273
45
0
-
-
1.9
ENSRNOT00000008999
9
ENSRNOE00000062798
chr5:
104307549-104308099
551
SH3G2_RAT
273-338
66
2
A:287-338
B:286-338
52
53
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3iqla_ (A:)
1b: SCOP_d3iqlb_ (B:)
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Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
SH3-domain
(369)
Family
:
automated matches
(114)
Protein domain
:
automated matches
(114)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(3)
1a
d3iqla_
A:
1b
d3iqlb_
B:
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CATH Domains
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Pfam Domains
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Asym.Unit (60 KB)
Header - Asym.Unit
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