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3IK7
Asym. Unit
Info
Asym.Unit (156 KB)
Biol.Unit 1 (78 KB)
Biol.Unit 2 (77 KB)
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(1)
Title
:
HUMAN GLUTATHIONE TRANSFERASE A4-4 WITH GSDHN
Authors
:
L. M. Balogh, I. Le Trong, W. M. Atkins, R. E. Stenkamp
Date
:
05 Aug 09 (Deposition) - 23 Jun 10 (Release) - 23 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.97
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Human Gst A4-4, Enzyme, Transferase, Cytoplasm, Polymorphism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. M. Balogh, I. Le Trong, K. A. Kripps, L. M. Shireman, R. E. Stenkamp, W. Zhang, B. Mannervik, W. M. Atkins
Substrate Specificity Combined With Stereopromiscuity In Glutathione Transferase A4-4-Dependent Metabolism Of 4-Hydroxynonenal.
Biochemistry V. 49 1541 2010
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: (S)-2-AMINO-5-((R)-1-(CARBOXYMETHY... (BOBa)
1b: (S)-2-AMINO-5-((R)-1-(CARBOXYMETHY... (BOBb)
1c: (S)-2-AMINO-5-((R)-1-(CARBOXYMETHY... (BOBc)
1d: (S)-2-AMINO-5-((R)-1-(CARBOXYMETHY... (BOBd)
2a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BOB
4
Ligand/Ion
(S)-2-AMINO-5-((R)-1-(CARBOXYMETHYLAMINO)-3-((3S,4R)-1,4-DIHYDROXYNONAN-3-YLTHIO)-1-OXOPROPAN-2-YLAMINO)-5-OXOPENTANOIC ACID
2
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:9 , ARG A:15 , GLN A:54 , VAL A:55 , PRO A:56 , GLN A:67 , THR A:68 , PHE A:111 , TYR A:212 , PHE A:220 , HOH A:6007 , HOH A:6150 , HOH A:6210 , ASP B:101 , ARG B:131
BINDING SITE FOR RESIDUE BOB A 501
2
AC2
SOFTWARE
ASP A:101 , ARG A:131 , TYR B:9 , GLY B:14 , ARG B:15 , GLN B:45 , GLN B:54 , VAL B:55 , GLN B:67 , THR B:68 , PHE B:111 , TYR B:212 , PHE B:220 , HOH B:6008 , HOH B:6125 , HOH B:6161
BINDING SITE FOR RESIDUE BOB B 502
3
AC3
SOFTWARE
TYR C:9 , GLY C:14 , GLN C:45 , GLN C:54 , VAL C:55 , GLN C:67 , THR C:68 , TYR C:212 , PHE C:220 , HOH C:6131 , ASP D:101 , ARG D:131
BINDING SITE FOR RESIDUE BOB C 503
4
AC4
SOFTWARE
ASP C:101 , ARG C:131 , TYR D:9 , GLY D:14 , ARG D:15 , GLN D:54 , VAL D:55 , GLN D:67 , THR D:68 , MET D:108 , TYR D:212 , TYR D:217 , PHE D:220 , HOH D:6104
BINDING SITE FOR RESIDUE BOB D 504
5
AC5
SOFTWARE
LYS C:43 , THR D:37 , LYS D:38 , GLU D:39 , ASN D:218 , ARG D:221
BINDING SITE FOR RESIDUE SO4 D 551
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SAPs(SNPs)/Variants
(2, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_022210 (L100P, chain A/B/C/D, )
2: VAR_022211 (T163A, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_022210
L
100
P
GSTA4_HUMAN
Polymorphism
45551133
A/B/C/D
L
100
P
2
UniProt
VAR_022211
T
163
A
GSTA4_HUMAN
Polymorphism
4147617
A/B/C/D
T
163
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: GST_NTER (A:3-83,B:3-83,C:3-83,D:3-83)
2: GST_CTER (A:85-208,B:85-208,C:85-208,D:85-20...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GST_NTER
PS50404
Soluble glutathione S-transferase N-terminal domain profile.
GSTA4_HUMAN
3-83
4
A:3-83
B:3-83
C:3-83
D:3-83
2
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
GSTA4_HUMAN
85-208
4
A:85-208
B:85-208
C:85-208
D:85-208
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Exons
(6, 24)
Info
All Exons
Exon 1.3b (A:2-29 | B:3-29 | C:3-29 | D:2-29)
Exon 1.4b (A:30-47 | B:30-47 | C:30-47 | D:30...)
Exon 1.5 (A:47-91 | B:47-91 | C:47-91 | D:47...)
Exon 1.6 (A:91-138 | B:91-138 | C:91-138 | D...)
Exon 1.7 (A:139-182 | B:139-182 | C:139-182 ...)
Exon 1.8c (A:183-222 | B:183-221 | C:183-220 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1a/1.3b
2: Boundary 1.3b/1.4b
3: Boundary 1.4b/1.5
4: Boundary 1.5/1.6
5: Boundary 1.6/1.7
6: Boundary 1.7/1.8c
7: Boundary 1.8c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000370963
1a
ENSE00001454017
chr6:
52860176-52860047
130
GSTA4_HUMAN
-
0
0
-
-
1.3b
ENST00000370963
3b
ENSE00002148969
chr6:
52859059-52858955
105
GSTA4_HUMAN
1-29
29
4
A:2-29
B:3-29
C:3-29
D:2-29
28
27
27
28
1.4b
ENST00000370963
4b
ENSE00002179898
chr6:
52852206-52852155
52
GSTA4_HUMAN
30-47
18
4
A:30-47
B:30-47
C:30-47
D:30-47
18
18
18
18
1.5
ENST00000370963
5
ENSE00002153494
chr6:
52850381-52850249
133
GSTA4_HUMAN
47-91
45
4
A:47-91
B:47-91
C:47-91
D:47-91
45
45
45
45
1.6
ENST00000370963
6
ENSE00002191487
chr6:
52849403-52849262
142
GSTA4_HUMAN
91-138
48
4
A:91-138
B:91-138
C:91-138
D:91-138
48
48
48
48
1.7
ENST00000370963
7
ENSE00002156856
chr6:
52847503-52847372
132
GSTA4_HUMAN
139-182
44
4
A:139-182
B:139-182
C:139-182
D:139-182
44
44
44
44
1.8c
ENST00000370963
8c
ENSE00002153108
chr6:
52843390-52842751
640
GSTA4_HUMAN
183-222
40
4
A:183-222
B:183-221
C:183-220
D:183-221
40
39
38
39
[
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]
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d3ik7a2 (A:81-222)
1b: SCOP_d3ik7b2 (B:81-221)
1c: SCOP_d3ik7c2 (C:81-220)
1d: SCOP_d3ik7d2 (D:81-221)
2a: SCOP_d3ik7a1 (A:2-80)
2b: SCOP_d3ik7b1 (B:3-80)
2c: SCOP_d3ik7c1 (C:3-80)
2d: SCOP_d3ik7d1 (D:2-80)
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Protein Domains
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(
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
Glutathione S-transferase (GST), C-terminal domain
(263)
Protein domain
:
Class alpha GST
(53)
Human (Homo sapiens), (a1-1) [TaxId: 9606]
(27)
1a
d3ik7a2
A:81-222
1b
d3ik7b2
B:81-221
1c
d3ik7c2
C:81-220
1d
d3ik7d2
D:81-221
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione S-transferase (GST), N-terminal domain
(216)
Protein domain
:
Class alpha GST
(53)
Human (Homo sapiens), (a1-1) [TaxId: 9606]
(27)
2a
d3ik7a1
A:2-80
2b
d3ik7b1
B:3-80
2c
d3ik7c1
C:3-80
2d
d3ik7d1
D:2-80
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Asymmetric Unit 1
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