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3IK7
Biol. Unit 2
Info
Asym.Unit (156 KB)
Biol.Unit 1 (78 KB)
Biol.Unit 2 (77 KB)
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(1)
Title
:
HUMAN GLUTATHIONE TRANSFERASE A4-4 WITH GSDHN
Authors
:
L. M. Balogh, I. Le Trong, W. M. Atkins, R. E. Stenkamp
Date
:
05 Aug 09 (Deposition) - 23 Jun 10 (Release) - 23 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.97
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Human Gst A4-4, Enzyme, Transferase, Cytoplasm, Polymorphism
(Keyword Search:
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Reference
:
L. M. Balogh, I. Le Trong, K. A. Kripps, L. M. Shireman, R. E. Stenkamp, W. Zhang, B. Mannervik, W. M. Atkins
Substrate Specificity Combined With Stereopromiscuity In Glutathione Transferase A4-4-Dependent Metabolism Of 4-Hydroxynonenal.
Biochemistry V. 49 1541 2010
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: (S)-2-AMINO-5-((R)-1-(CARBOXYMETHY... (BOBa)
1b: (S)-2-AMINO-5-((R)-1-(CARBOXYMETHY... (BOBb)
1c: (S)-2-AMINO-5-((R)-1-(CARBOXYMETHY... (BOBc)
1d: (S)-2-AMINO-5-((R)-1-(CARBOXYMETHY... (BOBd)
2a: SULFATE ION (SO4a)
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No.
Name
Count
Type
Full Name
1
BOB
2
Ligand/Ion
(S)-2-AMINO-5-((R)-1-(CARBOXYMETHYLAMINO)-3-((3S,4R)-1,4-DIHYDROXYNONAN-3-YLTHIO)-1-OXOPROPAN-2-YLAMINO)-5-OXOPENTANOIC ACID
2
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(3, 3)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
TYR C:9 , GLY C:14 , GLN C:45 , GLN C:54 , VAL C:55 , GLN C:67 , THR C:68 , TYR C:212 , PHE C:220 , HOH C:6131 , ASP D:101 , ARG D:131
BINDING SITE FOR RESIDUE BOB C 503
2
AC4
SOFTWARE
ASP C:101 , ARG C:131 , TYR D:9 , GLY D:14 , ARG D:15 , GLN D:54 , VAL D:55 , GLN D:67 , THR D:68 , MET D:108 , TYR D:212 , TYR D:217 , PHE D:220 , HOH D:6104
BINDING SITE FOR RESIDUE BOB D 504
3
AC5
SOFTWARE
LYS C:43 , THR D:37 , LYS D:38 , GLU D:39 , ASN D:218 , ARG D:221
BINDING SITE FOR RESIDUE SO4 D 551
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_022210 (L100P, chain C/D, )
2: VAR_022211 (T163A, chain C/D, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_022210
L
100
P
GSTA4_HUMAN
Polymorphism
45551133
C/D
L
100
P
2
UniProt
VAR_022211
T
163
A
GSTA4_HUMAN
Polymorphism
4147617
C/D
T
163
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: GST_NTER (C:3-83,D:3-83)
2: GST_CTER (C:85-208,D:85-208)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GST_NTER
PS50404
Soluble glutathione S-transferase N-terminal domain profile.
GSTA4_HUMAN
3-83
2
-
-
C:3-83
D:3-83
2
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
GSTA4_HUMAN
85-208
2
-
-
C:85-208
D:85-208
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d3ik7a2 (A:81-222)
1b: SCOP_d3ik7b2 (B:81-221)
1c: SCOP_d3ik7c2 (C:81-220)
1d: SCOP_d3ik7d2 (D:81-221)
2a: SCOP_d3ik7a1 (A:2-80)
2b: SCOP_d3ik7b1 (B:3-80)
2c: SCOP_d3ik7c1 (C:3-80)
2d: SCOP_d3ik7d1 (D:2-80)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
Glutathione S-transferase (GST), C-terminal domain
(263)
Protein domain
:
Class alpha GST
(53)
Human (Homo sapiens), (a1-1) [TaxId: 9606]
(27)
1a
d3ik7a2
A:81-222
1b
d3ik7b2
B:81-221
1c
d3ik7c2
C:81-220
1d
d3ik7d2
D:81-221
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione S-transferase (GST), N-terminal domain
(216)
Protein domain
:
Class alpha GST
(53)
Human (Homo sapiens), (a1-1) [TaxId: 9606]
(27)
2a
d3ik7a1
A:2-80
2b
d3ik7b1
B:3-80
2c
d3ik7c1
C:3-80
2d
d3ik7d1
D:2-80
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (156 KB)
Header - Asym.Unit
Biol.Unit 1 (78 KB)
Header - Biol.Unit 1
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