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3IG1
Asym. Unit
Info
Asym.Unit (168 KB)
Biol.Unit 1 (164 KB)
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(1)
Title
:
HIV-1 REVERSE TRANSCRIPTASE WITH THE INHIBITOR BETA-THUJAPLICINOL BOUND AT THE RNASE H ACTIVE SITE
Authors
:
D. M. Himmel, K. A. Maegley, T. A. Pauly, E. Arnold
Date
:
27 Jul 09 (Deposition) - 26 Jan 10 (Release) - 26 Jan 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Rnase H Inhibitor, Protein-Inhibitor Complex, Structure- Based Drug Design, Tropolones, Tropylium Ion, Divalent Cation Chelator, Aids, Dna-Directed Dna Polymerase, Metal- Binding, Multifunctional Enzyme, Nucleotidyltransferase, Rna-Binding, Rna-Directed Dna Polymerase, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. M. Himmel, K. A. Maegley, T. A. Pauly, J. D. Bauman, K. Das, C. Dharia, A. D. Clark, K. Ryan, M. J. Hickey, R. A. Love, S. H. Hughes, S. Bergqvist, E. Arnold
Structure Of Hiv-1 Reverse Transcriptase With The Inhibitor Beta-Thujaplicinol Bound At The Rnase H Active Site.
Structure V. 17 1625 2009
(for further references see the
PDB file header
)
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: 2,7-DIHYDROXY-4-(PROPAN-2-YL)CYCLO... (JTHa)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
JTH
1
Ligand/Ion
2,7-DIHYDROXY-4-(PROPAN-2-YL)CYCLOHEPTA-2,4,6-TRIEN-1-ONE
2
MN
2
Ligand/Ion
MANGANESE (II) ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:443 , GLU A:478 , ASP A:498 , HIS A:539 , ASP A:549 , MN A:556 , MN A:557
BINDING SITE FOR RESIDUE JTH A 1001
2
AC2
SOFTWARE
ASP A:443 , GLU A:478 , ASP A:498 , JTH A:1001
BINDING SITE FOR RESIDUE MN A 556
3
AC3
SOFTWARE
ASP A:443 , ASP A:549 , JTH A:1001
BINDING SITE FOR RESIDUE MN A 557
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SAPs(SNPs)/Variants
(5, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_POL_HV1B1_003 (K172R, chain A/B, )
2: VAR_POL_HV1B1_004 (K451R, chain A, )
3: VAR_POL_HV1B1_005 (V458L, chain A, )
4: VAR_POL_HV1B1_006 (K512Q, chain A, )
5: VAR_POL_HV1B1_007 (E529Q, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_POL_HV1B1_003
*
K
771
R
POL_HV1B1
---
---
A/B
K
172
R
2
UniProt
VAR_POL_HV1B1_004
*
K
1050
R
POL_HV1B1
---
---
A
K
451
R
3
UniProt
VAR_POL_HV1B1_005
*
V
1057
L
POL_HV1B1
---
---
A
V
458
L
4
UniProt
VAR_POL_HV1B1_006
*
K
1111
Q
POL_HV1B1
---
---
A
K
512
Q
5
UniProt
VAR_POL_HV1B1_007
*
E
1128
Q
POL_HV1B1
---
---
A
E
529
Q
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: RT_POL (A:44-234,B:44-234)
2: RNASE_H (A:434-554)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RT_POL
PS50878
Reverse transcriptase (RT) catalytic domain profile.
POL_HV1B1
643-833
2
A:44-234
B:44-234
2
RNASE_H
PS50879
RNase H domain profile.
POL_HV1B1
1033-1156
1
A:434-554
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d3ig1a2 (A:430-554)
2a: SCOP_d3ig1a1 (A:3-429)
2b: SCOP_d3ig1b_ (B:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Ribonuclease H-like
(775)
Family
:
automated matches
(127)
Protein domain
:
automated matches
(127)
Human immunodeficiency virus type 1 bh10 [TaxId: 11678]
(12)
1a
d3ig1a2
A:430-554
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
Reverse transcriptase
(217)
Protein domain
:
automated matches
(34)
Human immunodeficiency virus type 1 bh10 [TaxId: 11678]
(5)
2a
d3ig1a1
A:3-429
2b
d3ig1b_
B:
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CATH Domains
(3, 9)
Info
all CATH domains
1a: CATH_3ig1B02 (B:99-123,B:165-233)
1b: CATH_3ig1A03 (A:226-319)
1c: CATH_3ig1B03 (B:234-319)
1d: CATH_3ig1A04 (A:320-426)
1e: CATH_3ig1B04 (B:320-427)
1f: CATH_3ig1A02 (A:91-115,A:157-225)
2a: CATH_3ig1A05 (A:427-554)
3a: CATH_3ig1A01 (A:3-90,A:116-156)
3b: CATH_3ig1B01 (B:9-98,B:124-164)
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(
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.270, no name defined]
(278)
Hiv-1 (Human immunodeficiency virus type 1 bh10)
(5)
1a
3ig1B02
B:99-123,B:165-233
1b
3ig1A03
A:226-319
1c
3ig1B03
B:234-319
1d
3ig1A04
A:320-426
1e
3ig1B04
B:320-427
1f
3ig1A02
A:91-115,A:157-225
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.10, no name defined]
(372)
Hiv-1 (Human immunodeficiency virus type 1 bh10)
(5)
2a
3ig1A05
A:427-554
Architecture
:
Roll
(3276)
Topology
:
HIV Type 1 Reverse Transcriptase; Chain A, domain 1
(164)
Homologous Superfamily
:
HIV Type 1 Reverse Transcriptase, subunit A, domain 1
(164)
Hiv-1 (Human immunodeficiency virus type 1 bh10)
(5)
3a
3ig1A01
A:3-90,A:116-156
3b
3ig1B01
B:9-98,B:124-164
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (168 KB)
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