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3HVQ
Asym. Unit
Info
Asym.Unit (152 KB)
Biol.Unit 1 (144 KB)
Biol.Unit 2 (82 KB)
Biol.Unit 3 (66 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A COMPLEX BETWEEN PROTEIN PHOSPHATASE 1 ALPHA (PP1) AND THE PP1 BINDING AND PDZ DOMAINS OF NEURABIN
Authors
:
D. A. Critton, M. J. Ragusa, R. Page, W. Peti
Date
:
16 Jun 09 (Deposition) - 23 Mar 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,C (1x)
Biol. Unit 3: B,D (1x)
Keywords
:
Pp1, Neurabin, Serine/Threonine Phosphatase, Post Synaptic Density, Glutametergic Receptors, Carbohydrate Metabolism, Cell Cycle, Cell Division, Glycogen Metabolism, Hydrolase, Iron, Manganese, Metal- Binding, Phosphoprotein, Protein Phosphatase, Actin-Binding, Cell Junction, Cell Projection, Cytoskeleton, Developmental Protein, Differentiation, Neurogenesis, Nucleus, Synapse, Synaptosome, Hydrolase-Hydrolase Regulator Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Ragusa, B. Dancheck, D. A. Critton, A. C. Nairn, R. Page, W. Peti
Spinophilin Directs Protein Phosphatase 1 Specificity By Blocking Substrate Binding Sites.
Nat. Struct. Mol. Biol. V. 17 459 2010
[
close entry info
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
3
Ligand/Ion
GLYCEROL
2
MN
4
Ligand/Ion
MANGANESE (II) ION
3
PO4
2
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:64 , HIS A:66 , ASP A:92 , MN A:331 , PO4 A:332 , HOH A:333 , HOH A:335
BINDING SITE FOR RESIDUE MN A 1
2
AC2
SOFTWARE
MN A:1 , ASP A:92 , ASN A:124 , HIS A:173 , HIS A:248 , PO4 A:332 , HOH A:335
BINDING SITE FOR RESIDUE MN A 331
3
AC3
SOFTWARE
MN A:1 , HIS A:66 , ASP A:92 , ARG A:96 , ASN A:124 , HIS A:125 , ARG A:221 , HIS A:248 , MN A:331 , HOH A:333 , HOH A:335 , HOH A:507 , HOH A:510
BINDING SITE FOR RESIDUE PO4 A 332
4
AC4
SOFTWARE
ASP B:64 , HIS B:66 , ASP B:92 , MN B:332 , PO4 B:333 , HOH B:337 , HOH B:338
BINDING SITE FOR RESIDUE MN B 331
5
AC5
SOFTWARE
ASP B:92 , ASN B:124 , HIS B:173 , HIS B:248 , MN B:331 , PO4 B:333 , HOH B:338
BINDING SITE FOR RESIDUE MN B 332
6
AC6
SOFTWARE
HIS B:66 , ASP B:92 , ARG B:96 , ASN B:124 , HIS B:125 , ARG B:221 , HIS B:248 , TYR B:272 , MN B:331 , MN B:332 , HOH B:337 , HOH B:338 , HOH B:513 , HOH B:515 , HOH B:516
BINDING SITE FOR RESIDUE PO4 B 333
7
AC7
SOFTWARE
LYS A:26 , GLY B:14 , ARG B:15 , GLU B:18 , HOH B:336 , HOH B:341
BINDING SITE FOR RESIDUE GOL B 1
8
AC8
SOFTWARE
LYS B:260 , HOH B:432
BINDING SITE FOR RESIDUE GOL B 334
9
AC9
SOFTWARE
CYS B:127 , SER B:129 , ILE B:130 , VAL B:195 , ASP B:197 , TRP B:206 , HOH B:422
BINDING SITE FOR RESIDUE GOL B 335
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: SER_THR_PHOSPHATASE (A:121-126,B:121-126)
2: PDZ (C:505-592)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SER_THR_PHOSPHATASE
PS00125
Serine/threonine specific protein phosphatases signature.
PP1A_HUMAN
121-126
2
A:121-126
B:121-126
2
PDZ
PS50106
PDZ domain profile.
NEB1_RAT
505-593
1
C:505-592
[
close PROSITE info
]
Exons
(14, 23)
Info
All Exons
Exon 1.1 (C:436-466 | D:435-466)
Exon 1.2 (C:467-511 | D:467-499)
Exon 1.3 (C:511-551 | -)
Exon 1.4 (C:551-559 | -)
Exon 1.5 (C:560-573 | -)
Exon 1.6 (C:574-584 | -)
Exon 1.7 (C:584-592 | -)
Exon 2.3a (A:7-19 | B:7-19)
Exon 2.4d (A:19-63 | B:19-63)
Exon 2.4f (A:63-140 | B:63-140)
Exon 2.5a (A:140-175 | B:140-175)
Exon 2.6a (A:175-249 | B:175-249)
Exon 2.6d (A:250-294 | B:250-294)
Exon 2.7c (A:295-300 | B:295-300)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary -/2.3a
10: Boundary 2.3a/2.4d
11: Boundary 2.4d/2.4f
12: Boundary 2.4f/2.5a
13: Boundary 2.5a/2.6a
14: Boundary 2.6a/2.6d
15: Boundary 2.6d/2.7c
16: Boundary 2.7c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000011756
1
ENSRNOE00000234466
chr4:
29656850-29658247
1398
NEB1_RAT
1-466
466
2
C:436-466
D:435-466
31
32
1.2
ENSRNOT00000011756
2
ENSRNOE00000234458
chr4:
29818404-29818536
133
NEB1_RAT
467-511
45
2
C:467-511
D:467-499
45
33
1.3
ENSRNOT00000011756
3
ENSRNOE00000234449
chr4:
29827866-29827986
121
NEB1_RAT
511-551
41
1
C:511-551
-
41
-
1.4
ENSRNOT00000011756
4
ENSRNOE00000234443
chr4:
29836250-29836274
25
NEB1_RAT
551-559
9
1
C:551-559
-
9
-
1.5
ENSRNOT00000011756
5
ENSRNOE00000234429
chr4:
29836279-29836320
42
NEB1_RAT
560-573
14
1
C:560-573
-
14
-
1.6
ENSRNOT00000011756
6
ENSRNOE00000234423
chr4:
29836325-29836356
32
NEB1_RAT
574-584
11
1
C:574-584
-
11
-
1.7
ENSRNOT00000011756
7
ENSRNOE00000234414
chr4:
29845516-29845651
136
NEB1_RAT
584-629
46
1
C:584-592
-
9
-
1.8
ENSRNOT00000011756
8
ENSRNOE00000234405
chr4:
29868210-29868365
156
NEB1_RAT
630-681
52
0
-
-
1.9
ENSRNOT00000011756
9
ENSRNOE00000234396
chr4:
29880214-29880267
54
NEB1_RAT
682-699
18
0
-
-
1.10b
ENSRNOT00000011756
10b
ENSRNOE00000287107
chr4:
29882803-29883032
230
NEB1_RAT
700-776
77
0
-
-
1.11
ENSRNOT00000011756
11
ENSRNOE00000234490
chr4:
29884329-29884425
97
NEB1_RAT
776-808
33
0
-
-
1.12
ENSRNOT00000011756
12
ENSRNOE00000234485
chr4:
29884519-29884690
172
NEB1_RAT
809-866
58
0
-
-
1.15
ENSRNOT00000011756
15
ENSRNOE00000233971
chr4:
29902418-29902575
158
NEB1_RAT
866-918
53
0
-
-
1.16
ENSRNOT00000011756
16
ENSRNOE00000083456
chr4:
29924526-29924645
120
NEB1_RAT
919-958
40
0
-
-
1.17
ENSRNOT00000011756
17
ENSRNOE00000233957
chr4:
29925420-29925443
24
NEB1_RAT
959-966
8
0
-
-
1.18
ENSRNOT00000011756
18
ENSRNOE00000083487
chr4:
29926495-29926677
183
NEB1_RAT
967-1027
61
0
-
-
1.19
ENSRNOT00000011756
19
ENSRNOE00000083535
chr4:
29927942-29928142
201
NEB1_RAT
1028-1093
66
0
-
-
2.3a
ENST00000376745
3a
ENSE00001471548
chr11:
67169402-67169199
204
PP1A_HUMAN
1-19
19
2
A:7-19
B:7-19
13
13
2.4d
ENST00000376745
4d
ENSE00001212206
chr11:
67168670-67168539
132
PP1A_HUMAN
19-63
45
2
A:19-63
B:19-63
45
45
2.4f
ENST00000376745
4f
ENSE00001741927
chr11:
67168390-67168160
231
PP1A_HUMAN
63-140
78
2
A:63-140
B:63-140
78
78
2.5a
ENST00000376745
5a
ENSE00001186176
chr11:
67167136-67167032
105
PP1A_HUMAN
140-175
36
2
A:140-175
B:140-175
36
36
2.6a
ENST00000376745
6a
ENSE00001186169
chr11:
67166634-67166411
224
PP1A_HUMAN
175-249
75
2
A:175-249
B:175-249
75
75
2.6d
ENST00000376745
6d
ENSE00001707059
chr11:
67166327-67166193
135
PP1A_HUMAN
250-294
45
2
A:250-294
B:250-294
45
45
2.7c
ENST00000376745
7c
ENSE00002183271
chr11:
67166116-67165672
445
PP1A_HUMAN
295-330
36
2
A:295-300
B:295-300
6
6
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3hvqa_ (A:)
1b: SCOP_d3hvqb_ (B:)
View:
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Classes
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)
(
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Folds
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(
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-dependent phosphatases
(115)
Superfamily
:
Metallo-dependent phosphatases
(115)
Family
:
Protein serine/threonine phosphatase
(50)
Protein domain
:
automated matches
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d3hvqa_
A:
1b
d3hvqb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3hvqA00 (A:7-300)
1b: CATH_3hvqB00 (B:7-300)
View:
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(
)
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Architectures
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(
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Topologies
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Purple Acid Phosphatase; chain A, domain 2
(87)
Homologous Superfamily
:
[code=3.60.21.10, no name defined]
(83)
Human (Homo sapiens)
(36)
1a
3hvqA00
A:7-300
1b
3hvqB00
B:7-300
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Protein & NOT PROSITE
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Chain C
Chain D
Asymmetric Unit 1
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