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3HKJ
Biol. Unit 1
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Asym.Unit (105 KB)
Biol.Unit 1 (52 KB)
Biol.Unit 2 (51 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN THROMBIN MUTANT W215A/E217A IN COMPLEX WITH THE EXTRACELLULAR FRAGMENT OF HUMAN PAR1
Authors
:
P. S. Gandhi, M. J. Page, Z. Chen, L. Bush-Pelc, E. Di Cera
Date
:
23 May 09 (Deposition) - 07 Jul 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Serine Protease, Acute Phase, Blood Coagulation, Cleavage On Pair Of Basic Residues, Disease Mutation, Disulfide Bond, Gamma- Carboxyglutamic Acid, Glycoprotein, Hydrolase, Kringle, Protease, Secreted, Zymogen, Cell Membrane, G-Protein Coupled Receptor, Membrane, Phosphoprotein, Receptor, Transducer, Transmembrane
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. S. Gandhi, M. J. Page, Z. Chen, L. Bush-Pelc, E. Di Cera
Mechanism Of The Anticoagulant Activity Of Thrombin Mutant W215A/E217A.
J. Biol. Chem. V. 284 24098 2009
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
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Label:
No.
Name
Count
Type
Full Name
1
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN B:60G , HOH B:1122 , HOH B:1132
BINDING SITE FOR RESIDUE NAG B 301
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SAPs(SNPs)/Variants
(8, 8)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_006714 (M32T, chain B, )
2: VAR_011782 (P37T, chain B, )
3: VAR_006715 (R67C, chain B, )
4: VAR_006716 (R73H, chain B, )
5: VAR_006717 (R101W, chain B, )
6: VAR_006718 (E146A, chain B, )
7: VAR_068913 (E164Q, chain B, )
8: VAR_006719 (G226V, chain B, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_006714
M
380
T
THRB_HUMAN
Disease (FA2D)
---
B
M
32
T
2
UniProt
VAR_011782
P
386
T
THRB_HUMAN
Polymorphism
5897
B
P
37
T
3
UniProt
VAR_006715
R
425
C
THRB_HUMAN
Disease (FA2D)
---
B
R
67
C
4
UniProt
VAR_006716
R
431
H
THRB_HUMAN
Disease (FA2D)
---
B
R
73
H
5
UniProt
VAR_006717
R
461
W
THRB_HUMAN
Disease (FA2D)
---
B
R
101
W
6
UniProt
VAR_006718
E
509
A
THRB_HUMAN
Disease (FA2D)
---
B
E
146
A
7
UniProt
VAR_068913
E
532
Q
THRB_HUMAN
Polymorphism
---
B
E
164
Q
8
UniProt
VAR_006719
G
601
V
THRB_HUMAN
Disease (FA2D)
---
B
G
226
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (B:16-243)
2: TRYPSIN_HIS (B:53-58)
3: TRYPSIN_SER (B:189-200)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
THRB_HUMAN
364-618
1
B:16-243
-
2
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
THRB_HUMAN
402-407
1
B:53-58
-
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
THRB_HUMAN
562-573
1
B:189-200
-
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Exons
(0, 0)
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SCOP Domains
(0, 0)
Info
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_3hkjE02 (E:28-120,E:233-246)
1b: CATH_3hkjE01 (E:16-27,E:121-232)
1c: CATH_3hkjB01 (B:16-27,B:121-232)
1d: CATH_3hkjB02 (B:28-120,B:233-247)
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Human (Homo sapiens)
(615)
1a
3hkjE02
E:28-120,E:233-246
1b
3hkjE01
E:16-27,E:121-232
1c
3hkjB01
B:16-27,B:121-232
1d
3hkjB02
B:28-120,B:233-247
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (105 KB)
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