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3H7R
Asym. Unit
Info
Asym.Unit (122 KB)
Biol.Unit 1 (117 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PLANT STRESS-RESPONSE ENZYME AKR4C8
Authors
:
S. A. White, P. J. Simpson, J. P. Ride
Date
:
28 Apr 09 (Deposition) - 04 Aug 09 (Release) - 15 Sep 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Stress Response, Aldo-Keto Reductase, Nadp, Drought Tolerance, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. J. Simpson, C. Tantitadapitak, A. M. Reed, O. C. Mather, C. M. Bunce, S. A. White, J. P. Ride
Characterization Of Two Novel Aldo-Keto Reductases From Arabidopsis: Expression Patterns, Broad Substrate Specificity, And An Open Active-Site Structure Suggest A Role In Toxicant Metabolism Following Stress.
J. Mol. Biol. V. 392 465 2009
(for further references see the
PDB file header
)
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
3a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
EDO
12
Ligand/Ion
1,2-ETHANEDIOL
3
NAP
1
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:22 , THR A:23 , TYR A:24 , ASP A:43 , TYR A:48 , HIS A:110 , SER A:154 , ASN A:155 , GLN A:176 , TYR A:202 , SER A:203 , PRO A:204 , LEU A:205 , GLY A:206 , SER A:207 , GLN A:208 , ARG A:214 , ALA A:235 , LEU A:250 , PRO A:251 , LYS A:252 , SER A:253 , SER A:254 , ARG A:258 , GLU A:261 , ASN A:262 , ACT A:501 , HOH A:637 , HOH A:836 , HOH A:839 , HOH A:972 , HOH A:993 , HOH A:1002
BINDING SITE FOR RESIDUE NAP A 401
02
AC2
SOFTWARE
TYR A:24 , TYR A:48 , HIS A:110 , NAP A:401 , HOH A:692 , HOH A:951
BINDING SITE FOR RESIDUE ACT A 501
03
AC3
SOFTWARE
PRO A:17 , CYS A:18 , VAL A:19 , ARG A:40 , HIS A:41 , HOH A:787
BINDING SITE FOR RESIDUE EDO A 502
04
AC4
SOFTWARE
GLN A:185 , GLY A:187 , LEU A:188 , GLU A:310 , HOH A:652 , HOH A:710
BINDING SITE FOR RESIDUE EDO A 503
05
AC5
SOFTWARE
THR A:123 , PRO A:124 , THR A:290 , GLU A:291 , ALA A:293 , HIS A:294 , HOH A:747 , HOH A:997
BINDING SITE FOR RESIDUE EDO A 504
06
AC6
SOFTWARE
LYS A:15 , LEU A:72 , PHE A:73 , HOH A:633 , HOH A:739 , HOH A:926
BINDING SITE FOR RESIDUE EDO A 505
07
AC7
SOFTWARE
ILE A:35 , LYS A:36 , ILE A:37 , GLY A:38 , ARG A:40 , PHE A:66 , HOH A:734 , HOH A:768 , HOH A:948
BINDING SITE FOR RESIDUE EDO A 506
08
AC8
SOFTWARE
ALA A:141 , LYS A:216 , EDO A:508 , HOH A:845 , HOH A:920 , HOH A:953
BINDING SITE FOR RESIDUE EDO A 507
09
AC9
SOFTWARE
GLU A:140 , ALA A:141 , ASP A:144 , ARG A:169 , LYS A:216 , EDO A:507 , HOH A:676 , HOH A:766 , HOH A:958
BINDING SITE FOR RESIDUE EDO A 508
10
BC1
SOFTWARE
GLU A:9 , ASN A:11 , LYS A:52 , GLY A:196 , HOH A:703
BINDING SITE FOR RESIDUE EDO A 509
11
BC2
SOFTWARE
GLU A:125 , GLU A:284 , ARG A:288 , HOH A:905 , HOH A:974
BINDING SITE FOR RESIDUE EDO A 510
12
BC3
SOFTWARE
LEU A:127 , HIS A:297 , PHE A:299
BINDING SITE FOR RESIDUE EDO A 511
13
BC4
SOFTWARE
GLN A:184 , GLN A:186 , GLN A:283 , HOH A:621 , HOH A:765 , HOH A:813
BINDING SITE FOR RESIDUE EDO A 512
14
BC5
SOFTWARE
GLU A:291 , PHE A:292 , HOH A:692 , HOH A:723
BINDING SITE FOR RESIDUE EDO A 513
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: ALDOKETO_REDUCTASE_1 (A:38-55)
2: ALDOKETO_REDUCTASE_2 (A:139-156)
3: ALDOKETO_REDUCTASE_3 (A:250-265)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDOKETO_REDUCTASE_1
PS00798
Aldo/keto reductase family signature 1.
AKRC8_ARATH
38-55
1
A:38-55
2
ALDOKETO_REDUCTASE_2
PS00062
Aldo/keto reductase family signature 2.
AKRC8_ARATH
139-156
1
A:139-156
3
ALDOKETO_REDUCTASE_3
PS00063
Aldo/keto reductase family putative active site signature.
AKRC8_ARATH
250-265
1
A:250-265
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3h7ra_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
NAD(P)-linked oxidoreductase
(286)
Family
:
automated matches
(35)
Protein domain
:
automated matches
(35)
Thale cress (Arabidopsis thaliana) [TaxId: 3702]
(2)
1a
d3h7ra_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3h7rA00 (A:5-311)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
NADP-dependent oxidoreductase
(181)
Mouse-ear cress (Arabidopsis thaliana)
(2)
1a
3h7rA00
A:5-311
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Pfam Domains
(0, 0)
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all PFAM domains
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Atom Selection
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Protein
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Hetero
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (122 KB)
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Header - Biol.Unit 1
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