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3GRO
Asym. Unit
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Asym.Unit (93 KB)
Biol.Unit 1 (87 KB)
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(1)
Title
:
HUMAN PALMITOYL-PROTEIN THIOESTERASE 1
Authors
:
E. Dobrovetsky, A. Seitova, Y. Tong, W. Tempel, A. Dong, C. H. Arrowsmith, A. M. Edwards, C. Bountra, J. Weigelt, A. Bochkarev, D. Cossar, H. Park, Structural Genomics Consortium (Sgc)
Date
:
26 Mar 09 (Deposition) - 07 Apr 09 (Release) - 07 Apr 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.53
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Neuronal Ceroid Lipofuscinosis, Neurodegeneration, Structural Genomics Consortium, Sgc, Disease Mutation, Disulfide Bond, Glycoprotein, Hydrolase, Lysosome, Polymorphism, Sensory Transduction, Vision
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Dobrovetsky, A. Seitova, Y. Tong, W. Tempel, A. Dong, C. H. Arrowsmith, A. M. Edwards, C. Bountra, J. Weigelt, A. Bochkarev, D. Cossar, H. Park
Human Palmitoyl-Protein Thioesterase 1
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 22)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
2a: UNKNOWN ATOM OR ION (UNXa)
2b: UNKNOWN ATOM OR ION (UNXb)
2c: UNKNOWN ATOM OR ION (UNXc)
2d: UNKNOWN ATOM OR ION (UNXd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
18
Mod. Amino Acid
SELENOMETHIONINE
2
UNX
4
Ligand/Ion
UNKNOWN ATOM OR ION
[
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]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(24, 48)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_058434 (W38C, chain A/B, )
02: VAR_005548 (H39Q, chain A/B, )
03: VAR_005549 (G42E, chain A/B, )
04: VAR_066874 (C45Y, chain A/B, )
05: VAR_005550 (T75P, chain A/B, )
06: VAR_005551 (D79G, chain A/B, )
07: VAR_018511 (G108R, chain A/B, )
08: VAR_005552 (Y109D, chain A/B, )
09: VAR_005553 (R122W, chain A/B, )
10: VAR_005554 (I134T, chain A/B, )
11: VAR_066875 (S138L, chain A/B, )
12: VAR_066876 (C152Y, chain A/B, )
13: VAR_005555 (Q177E, chain A/B, )
14: VAR_005556 (V181L, chain A/B, )
15: VAR_005557 (V181M, chain A/B, )
16: VAR_066877 (H187R, chain A/B, )
17: VAR_066878 (P189R, chain A/B, )
18: VAR_005558 (L219Q, chain A/B, )
19: VAR_066879 (L222P, chain A/B, )
20: VAR_066880 (V228G, chain A/B, )
21: VAR_005559 (Y247H, chain A/B, )
22: VAR_005560 (G250V, chain A/B, )
23: VAR_066881 (W296R, chain A/B, )
24: VAR_066882 (L305P, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_058434
W
38
C
PPT1_HUMAN
Disease (CLN1)
---
A/B
W
38
C
02
UniProt
VAR_005548
H
39
Q
PPT1_HUMAN
Disease (CLN1)
---
A/B
H
39
Q
03
UniProt
VAR_005549
G
42
E
PPT1_HUMAN
Disease (CLN1)
---
A/B
G
42
E
04
UniProt
VAR_066874
C
45
Y
PPT1_HUMAN
Disease (CLN1)
---
A/B
C
45
Y
05
UniProt
VAR_005550
T
75
P
PPT1_HUMAN
Disease (CLN1)
---
A/B
T
75
P
06
UniProt
VAR_005551
D
79
G
PPT1_HUMAN
Disease (CLN1)
---
A/B
D
79
G
07
UniProt
VAR_018511
G
108
R
PPT1_HUMAN
Disease (CLN1)
---
A/B
G
108
R
08
UniProt
VAR_005552
Y
109
D
PPT1_HUMAN
Disease (CLN1)
---
A/B
Y
109
D
09
UniProt
VAR_005553
R
122
W
PPT1_HUMAN
Disease (CLN1)
137852695
A/B
R
122
W
10
UniProt
VAR_005554
I
134
T
PPT1_HUMAN
Polymorphism
1800205
A/B
I
134
T
11
UniProt
VAR_066875
S
138
L
PPT1_HUMAN
Disease (CLN1)
---
A/B
S
138
L
12
UniProt
VAR_066876
C
152
Y
PPT1_HUMAN
Disease (CLN1)
---
A/B
C
152
Y
13
UniProt
VAR_005555
Q
177
E
PPT1_HUMAN
Disease (CLN1)
---
A/B
Q
177
E
14
UniProt
VAR_005556
V
181
L
PPT1_HUMAN
Disease (CLN1)
---
A/B
V
181
L
15
UniProt
VAR_005557
V
181
M
PPT1_HUMAN
Disease (CLN1)
---
A/B
V
181
M
16
UniProt
VAR_066877
H
187
R
PPT1_HUMAN
Disease (CLN1)
---
A/B
H
187
R
17
UniProt
VAR_066878
P
189
R
PPT1_HUMAN
Disease (CLN1)
---
A/B
P
189
R
18
UniProt
VAR_005558
L
219
Q
PPT1_HUMAN
Disease (CLN1)
---
A/B
L
219
Q
19
UniProt
VAR_066879
L
222
P
PPT1_HUMAN
Disease (CLN1)
---
A/B
L
222
P
20
UniProt
VAR_066880
V
228
G
PPT1_HUMAN
Disease (CLN1)
---
A/B
V
228
G
21
UniProt
VAR_005559
Y
247
H
PPT1_HUMAN
Disease (CLN1)
---
A/B
Y
247
H
22
UniProt
VAR_005560
G
250
V
PPT1_HUMAN
Disease (CLN1)
---
A/B
G
250
V
23
UniProt
VAR_066881
W
296
R
PPT1_HUMAN
Disease (CLN1)
---
A/B
W
296
R
24
UniProt
VAR_066882
L
305
P
PPT1_HUMAN
Disease (CLN1)
---
A/B
L
305
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3groa_ (A:)
1b: SCOP_d3grob_ (B:)
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Classes
(
)
(
)
Folds
(
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Thioesterases
(6)
Protein domain
:
automated matches
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d3groa_
A:
1b
d3grob_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3groA00 (A:30-306)
1b: CATH_3groB00 (B:31-305)
View:
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(
)
(
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(
)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Human (Homo sapiens)
(118)
1a
3groA00
A:30-306
1b
3groB00
B:31-305
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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