PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3GJO
Asym. Unit
Info
Asym.Unit (54 KB)
Biol.Unit 1 (26 KB)
Biol.Unit 2 (23 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN EB1 IN COMPLEX WITH MICROTUBULE TIP LOCALIZATION SIGNAL PEPTIDE OF MACF
Authors
:
S. Honnappa, M. O. Steinmetz
Date
:
09 Mar 09 (Deposition) - 04 Aug 09 (Release) - 18 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,E,F (1x)
Biol. Unit 2: C,D,G,H (1x)
Keywords
:
Eb1 Structural Motif, +Tip Protein Complex, Sxip Motiff, Apc/Dynactin Binding Protein, Microtubule Actin Cross-Linking Factor, Cell Cycle, Cell Division, Mitosis, Phosphoprotein, Actin-Binding Calcium, Structural Protein, Microtubule, Actin-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Honnappa, S. M. Gouveia, A. Weisbrich, F. F. Damberger, N. S. Bhavesh, H. Jawhari, I. Grigoriev, F. J. A. Van Rijssel, R. M. Buey, A. Lawera, I. Jelesarov, F. K. Winkler, K. Wuthrich, A. Akhmanova, M. O. Steinmetz
An Eb1-Binding Motif Acts As A Microtubule Tip Localization Signal
Cell(Cambridge, Mass. ) V. 138 366 2009
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(3, 11)
Info
All Exons
Exon 1.5 (A:192-199 | B:191-199 | C:192-199 ...)
Exon 1.6 (A:200-250 | B:200-250 (gaps) | C:2...)
Exon 1.7b (A:251-257 | B:251-256 | C:251-256 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.4/1.5
2: Boundary 1.5/1.6
3: Boundary 1.6/1.7b
4: Boundary 1.7b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000375571
1
ENSE00001467575
chr20:
31407699-31407834
136
MARE1_HUMAN
-
0
0
-
-
1.2a
ENST00000375571
2a
ENSE00001467571
chr20:
31413731-31413854
124
MARE1_HUMAN
1-41
41
0
-
-
1.3a
ENST00000375571
3a
ENSE00000661239
chr20:
31421523-31421668
146
MARE1_HUMAN
41-89
49
0
-
-
1.4
ENST00000375571
4
ENSE00000661240
chr20:
31424440-31424647
208
MARE1_HUMAN
90-159
70
0
-
-
1.5
ENST00000375571
5
ENSE00000661241
chr20:
31427541-31427662
122
MARE1_HUMAN
159-199
41
4
A:192-199
B:191-199
C:192-199
D:192-199
8
9
8
8
1.6
ENST00000375571
6
ENSE00000661242
chr20:
31434424-31434576
153
MARE1_HUMAN
200-250
51
4
A:200-250
B:200-250 (gaps)
C:200-250
D:200-249 (gaps)
51
51
51
50
1.7b
ENST00000375571
7b
ENSE00001950425
chr20:
31436478-31438211
1734
MARE1_HUMAN
251-268
18
3
A:251-257
B:251-256
C:251-256
-
7
6
6
-
[
close EXON info
]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3gjoa_ (A:)
1b: SCOP_d3gjob_ (B:)
1c: SCOP_d3gjoc_ (C:)
1d: SCOP_d3gjod_ (D:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EB1 dimerisation domain-like
(9)
Superfamily
:
EB1 dimerisation domain-like
(9)
Family
:
EB1 dimerisation domain-like
(9)
Protein domain
:
Microtubule-associated protein EB1, C-terminal dimerization domain
(8)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d3gjoa_
A:
1b
d3gjob_
B:
1c
d3gjoc_
C:
1d
d3gjod_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (54 KB)
Header - Asym.Unit
Biol.Unit 1 (26 KB)
Header - Biol.Unit 1
Biol.Unit 2 (23 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3GJO
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help