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3GFT
Biol. Unit 3
Info
Asym.Unit (174 KB)
Biol.Unit 1 (32 KB)
Biol.Unit 2 (32 KB)
Biol.Unit 3 (31 KB)
Biol.Unit 4 (29 KB)
Biol.Unit 5 (31 KB)
Biol.Unit 6 (31 KB)
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(1)
Title
:
HUMAN K-RAS (Q61H) IN COMPLEX WITH A GTP ANALOGUE
Authors
:
Y. Tong, W. Tempel, L. Shen, C. H. Arrowsmith, A. M. Edwards, M. Sundstro J. Weigelt, A. Bochkarev, H. Park, Structural Genomics Consortium
Date
:
27 Feb 09 (Deposition) - 10 Mar 09 (Release) - 28 Jan 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.27
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Cancer, Small Gtpase, Mutations, Gtp Analogue, Structural Genomics Consortium, Sgc, Cardiomyopathy, Cell Membrane, Deafness, Disease Mutation, Gtp-Binding, Lipoprotein, Membrane, Methylation, Nucleotide-Binding, Palmitate, Prenylation, Proto-Oncogene, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Tong, W. Tempel, L. Shen, C. H. Arrowsmith, A. M. Edwards, M. Sundstrom, J. Weigelt, A. Bochkarev, H. Park
Human K-Ras In Complex With A Gtp Analogue
To Be Published
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
2a: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPa)
2b: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPb)
2c: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPc)
2d: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPd)
2e: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPe)
2f: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPf)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
4a: UNKNOWN ATOM OR ION (UNXa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CIT
-1
Ligand/Ion
CITRIC ACID
2
GNP
1
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
UNX
-1
Ligand/Ion
UNKNOWN ATOM OR ION
[
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]
Sites
(2, 2)
Info
All Sites
1: AC6 (SOFTWARE)
2: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC6
SOFTWARE
SER C:17 , THR C:35 , GNP C:201 , HOH C:405
BINDING SITE FOR RESIDUE MG C 202
2
AC7
SOFTWARE
GLY C:12 , GLY C:13 , VAL C:14 , GLY C:15 , LYS C:16 , SER C:17 , ALA C:18 , PHE C:28 , VAL C:29 , ASP C:30 , THR C:35 , GLY C:60 , ASN C:116 , LYS C:117 , ASP C:119 , LEU C:120 , SER C:145 , ALA C:146 , MG C:202 , HOH C:405
BINDING SITE FOR RESIDUE GNP C 201
[
close Site info
]
SAPs(SNPs)/Variants
(39, 39)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_065144 (K5E, chain C, )
02: VAR_064849 (K5N, chain C, )
03: VAR_036305 (G12A, chain C, )
04: VAR_RASK_HUMAN_CCDS8702_1_07 (G12A, chain C, )
05: VAR_006839 (G12C, chain C, )
06: VAR_016026 (G12D, chain C, )
07: VAR_RASK_HUMAN_CCDS8702_1_02 (G12D, chain C, )
08: VAR_RASK_HUMAN_CCDS8702_1_03 (G12D, chain C, )
09: VAR_RASK_HUMAN_CCDS8702_1_08 (G12D, chain C, )
10: VAR_RASK_HUMAN_CCDS8702_1_09 (G12D, chain C, )
11: VAR_016027 (G12R, chain C, )
12: VAR_016028 (G12S, chain C, )
13: VAR_RASK_HUMAN_CCDS8702_1_01 (G12S, chain C, )
14: VAR_006840 (G12V, chain C, )
15: VAR_RASK_HUMAN_CCDS8702_1_04 (G12V, chain C, )
16: VAR_RASK_HUMAN_CCDS8702_1_05 (G12V, chain C, )
17: VAR_RASK_HUMAN_CCDS8702_1_06 (G12V, chain C, )
18: VAR_016029 (G13D, chain C, )
19: VAR_RASK_HUMAN_CCDS8702_1_10 (G13D, chain C, )
20: VAR_RASK_HUMAN_CCDS8702_1_11 (G13D, chain C, )
21: VAR_RASK_HUMAN_CCDS8702_1_12 (G13D, chain C, )
22: VAR_065145 (G13R, chain C, )
23: VAR_026109 (V14I, chain C, )
24: VAR_064850 (Q22E, chain C, )
25: VAR_064851 (Q22R, chain C, )
26: VAR_064852 (P34L, chain C, )
27: VAR_064853 (P34Q, chain C, )
28: VAR_026110 (P34R, chain C, )
29: VAR_026111 (T58I, chain C, )
30: VAR_016030 (A59T, chain C, )
31: VAR_026112 (G60R, chain C, )
32: VAR_065146 (G60S, chain C, )
33: VAR_069784 (Y71H, chain C, )
34: VAR_036307 (K117N, chain C, )
35: VAR_RASK_HUMAN_CCDS8702_1_14 (K117N, chain C, )
36: VAR_036308 (A146T, chain C, )
37: VAR_RASK_HUMAN_CCDS8702_1_15 (A146T, chain C, )
38: VAR_RASK_HUMAN_CCDS8702_1_16 (A146T, chain C, )
39: VAR_069785 (K147E, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_065144
K
5
E
RASK_HUMAN
Disease (NS3)
---
C
K
5
E
02
UniProt
VAR_064849
K
5
N
RASK_HUMAN
Disease (GASC)
---
C
K
5
N
03
UniProt
VAR_036305
G
12
A
RASK_HUMAN
Unclassified
---
C
G
12
A
04
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_07
*
G
12
A
RASK_HUMAN
Disease (Colorectal cancer)
---
C
G
12
A
05
UniProt
VAR_006839
G
12
C
RASK_HUMAN
Unclassified
---
C
G
12
C
06
UniProt
VAR_016026
G
12
D
RASK_HUMAN
Unclassified
---
C
G
12
D
07
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_02
*
G
12
D
RASK_HUMAN
Disease (Colorectal cancer)
---
C
G
12
D
08
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_03
*
G
12
D
RASK_HUMAN
Disease (Colorectal cancer)
---
C
G
12
D
09
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_08
*
G
12
D
RASK_HUMAN
Disease (Colorectal cancer)
---
C
G
12
D
10
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_09
*
G
12
D
RASK_HUMAN
Disease (Colorectal cancer)
---
C
G
12
D
11
UniProt
VAR_016027
G
12
R
RASK_HUMAN
Unclassified
---
C
G
12
R
12
UniProt
VAR_016028
G
12
S
RASK_HUMAN
Unclassified
---
C
G
12
S
13
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_01
*
G
12
S
RASK_HUMAN
Disease (Colorectal cancer)
---
C
G
12
S
14
UniProt
VAR_006840
G
12
V
RASK_HUMAN
Unclassified
---
C
G
12
V
15
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_04
*
G
12
V
RASK_HUMAN
Disease (Colorectal cancer)
---
C
G
12
V
16
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_05
*
G
12
V
RASK_HUMAN
Disease (Colorectal cancer)
---
C
G
12
V
17
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_06
*
G
12
V
RASK_HUMAN
Disease (Colorectal cancer)
---
C
G
12
V
18
UniProt
VAR_016029
G
13
D
RASK_HUMAN
Disease (GASC)
---
C
G
13
D
19
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_10
*
G
13
D
RASK_HUMAN
Disease (Colorectal cancer)
---
C
G
13
D
20
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_11
*
G
13
D
RASK_HUMAN
Disease (Colorectal cancer)
---
C
G
13
D
21
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_12
*
G
13
D
RASK_HUMAN
Disease (Colorectal cancer)
---
C
G
13
D
22
UniProt
VAR_065145
G
13
R
RASK_HUMAN
Unclassified
---
C
G
13
R
23
UniProt
VAR_026109
V
14
I
RASK_HUMAN
Disease (NS3)
---
C
V
14
I
24
UniProt
VAR_064850
Q
22
E
RASK_HUMAN
Disease (CFC2)
---
C
Q
22
E
25
UniProt
VAR_064851
Q
22
R
RASK_HUMAN
Disease (NS3)
---
C
Q
22
R
26
UniProt
VAR_064852
P
34
L
RASK_HUMAN
Disease (NS3)
---
C
P
34
L
27
UniProt
VAR_064853
P
34
Q
RASK_HUMAN
Disease (NS3)
---
C
P
34
Q
28
UniProt
VAR_026110
P
34
R
RASK_HUMAN
Disease (CFC2)
---
C
P
34
R
30
UniProt
VAR_026111
T
58
I
RASK_HUMAN
Disease (NS3)
---
C
T
58
I
31
UniProt
VAR_016030
A
59
T
RASK_HUMAN
Disease (GASC)
---
C
A
59
T
32
UniProt
VAR_026112
G
60
R
RASK_HUMAN
Disease (CFC2)
---
C
G
60
R
33
UniProt
VAR_065146
G
60
S
RASK_HUMAN
Disease (NS3)
---
C
G
60
S
37
UniProt
VAR_069784
Y
71
H
RASK_HUMAN
Disease (CFC2)
---
C
Y
71
H
38
UniProt
VAR_036307
K
117
N
RASK_HUMAN
Unclassified
---
C
K
117
N
39
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_14
*
K
117
N
RASK_HUMAN
Disease (Colorectal cancer)
---
C
K
117
N
40
UniProt
VAR_036308
A
146
T
RASK_HUMAN
Unclassified
---
C
A
146
T
41
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_15
*
A
146
T
RASK_HUMAN
Disease (Colorectal cancer)
---
C
A
146
T
42
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_16
*
A
146
T
RASK_HUMAN
Disease (Colorectal cancer)
---
C
A
146
T
43
UniProt
VAR_069785
K
147
E
RASK_HUMAN
Disease (CFC2)
---
C
K
147
E
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RAS (C:1-164)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RAS
PS51421
small GTPase Ras family profile.
RASK_HUMAN
1-189
1
-
-
C:1-164
-
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3gfta_ (A:)
1b: SCOP_d3gftb_ (B:)
1c: SCOP_d3gftc_ (C:)
1d: SCOP_d3gftd_ (D:)
1e: SCOP_d3gfte_ (E:)
1f: SCOP_d3gftf_ (F:)
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Classes
(
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(
)
Folds
(
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(
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Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
automated matches
(173)
Human (Homo sapiens) [TaxId: 9606]
(112)
1a
d3gfta_
A:
1b
d3gftb_
B:
1c
d3gftc_
C:
1d
d3gftd_
D:
1e
d3gfte_
E:
1f
d3gftf_
F:
[
close SCOP info
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_3gftA00 (A:1-167)
1b: CATH_3gftB00 (B:-2-167)
1c: CATH_3gftC00 (C:-3-167)
1d: CATH_3gftE00 (E:-2-167)
1e: CATH_3gftF00 (F:-2-167)
1f: CATH_3gftD00 (D:1-167)
View:
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(
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(
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Architectures
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(
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
3gftA00
A:1-167
1b
3gftB00
B:-2-167
1c
3gftC00
C:-3-167
1d
3gftE00
E:-2-167
1e
3gftF00
F:-2-167
1f
3gftD00
D:1-167
[
close CATH info
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
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Chain C
Asymmetric Unit 1
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