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Getting 'Exon' information from database.
3GFT
Asym. Unit
Info
Asym.Unit (174 KB)
Biol.Unit 1 (32 KB)
Biol.Unit 2 (32 KB)
Biol.Unit 3 (31 KB)
Biol.Unit 4 (29 KB)
Biol.Unit 5 (31 KB)
Biol.Unit 6 (31 KB)
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(1)
Title
:
HUMAN K-RAS (Q61H) IN COMPLEX WITH A GTP ANALOGUE
Authors
:
Y. Tong, W. Tempel, L. Shen, C. H. Arrowsmith, A. M. Edwards, M. Sundstro J. Weigelt, A. Bochkarev, H. Park, Structural Genomics Consortium
Date
:
27 Feb 09 (Deposition) - 10 Mar 09 (Release) - 28 Jan 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.27
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Cancer, Small Gtpase, Mutations, Gtp Analogue, Structural Genomics Consortium, Sgc, Cardiomyopathy, Cell Membrane, Deafness, Disease Mutation, Gtp-Binding, Lipoprotein, Membrane, Methylation, Nucleotide-Binding, Palmitate, Prenylation, Proto-Oncogene, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Tong, W. Tempel, L. Shen, C. H. Arrowsmith, A. M. Edwards, M. Sundstrom, J. Weigelt, A. Bochkarev, H. Park
Human K-Ras In Complex With A Gtp Analogue
To Be Published
[
close entry info
]
Hetero Components
(4, 14)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
2a: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPa)
2b: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPb)
2c: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPc)
2d: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPd)
2e: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPe)
2f: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPf)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
4a: UNKNOWN ATOM OR ION (UNXa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CIT
1
Ligand/Ion
CITRIC ACID
2
GNP
6
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
3
MG
6
Ligand/Ion
MAGNESIUM ION
4
UNX
1
Ligand/Ion
UNKNOWN ATOM OR ION
[
close Hetero Component info
]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:17 , THR A:35 , GNP A:201 , HOH A:401 , HOH A:402
BINDING SITE FOR RESIDUE MG A 202
02
AC2
SOFTWARE
GLY A:12 , GLY A:13 , VAL A:14 , GLY A:15 , LYS A:16 , SER A:17 , ALA A:18 , PHE A:28 , VAL A:29 , ASP A:30 , GLU A:31 , TYR A:32 , PRO A:34 , THR A:35 , GLY A:60 , ASN A:116 , LYS A:117 , ASP A:119 , LEU A:120 , SER A:145 , ALA A:146 , LYS A:147 , MG A:202 , HOH A:401 , HOH A:402 , HOH A:463 , HOH A:483
BINDING SITE FOR RESIDUE GNP A 201
03
AC3
SOFTWARE
ILE A:36 , ALA A:59 , GLU A:62 , TYR A:71 , HIS B:95
BINDING SITE FOR RESIDUE UNX A 170
04
AC4
SOFTWARE
SER B:17 , THR B:35 , GNP B:201 , HOH B:403 , HOH B:404
BINDING SITE FOR RESIDUE MG B 202
05
AC5
SOFTWARE
GLY B:12 , GLY B:13 , VAL B:14 , GLY B:15 , LYS B:16 , SER B:17 , ALA B:18 , PHE B:28 , VAL B:29 , ASP B:30 , GLU B:31 , TYR B:32 , PRO B:34 , THR B:35 , GLY B:60 , ASN B:116 , LYS B:117 , ASP B:119 , LEU B:120 , SER B:145 , ALA B:146 , MG B:202 , HOH B:403 , HOH B:404
BINDING SITE FOR RESIDUE GNP B 201
06
AC6
SOFTWARE
SER C:17 , THR C:35 , GNP C:201 , HOH C:405
BINDING SITE FOR RESIDUE MG C 202
07
AC7
SOFTWARE
GLY C:12 , GLY C:13 , VAL C:14 , GLY C:15 , LYS C:16 , SER C:17 , ALA C:18 , PHE C:28 , VAL C:29 , ASP C:30 , THR C:35 , GLY C:60 , ASN C:116 , LYS C:117 , ASP C:119 , LEU C:120 , SER C:145 , ALA C:146 , MG C:202 , HOH C:405
BINDING SITE FOR RESIDUE GNP C 201
08
AC8
SOFTWARE
SER D:17 , ASP D:57 , THR D:58 , GNP D:201
BINDING SITE FOR RESIDUE MG D 202
09
AC9
SOFTWARE
GLY D:12 , GLY D:13 , VAL D:14 , GLY D:15 , LYS D:16 , SER D:17 , ALA D:18 , PHE D:28 , VAL D:29 , ASP D:30 , GLU D:31 , GLY D:60 , ASN D:116 , LYS D:117 , ASP D:119 , LEU D:120 , SER D:145 , ALA D:146 , MG D:202
BINDING SITE FOR RESIDUE GNP D 201
10
BC1
SOFTWARE
SER E:17 , THR E:35 , GNP E:201
BINDING SITE FOR RESIDUE MG E 202
11
BC2
SOFTWARE
GLY E:13 , VAL E:14 , GLY E:15 , LYS E:16 , SER E:17 , ALA E:18 , PHE E:28 , VAL E:29 , ASP E:30 , TYR E:32 , THR E:35 , GLY E:60 , ASN E:116 , LYS E:117 , ASP E:119 , LEU E:120 , SER E:145 , ALA E:146 , MG E:202
BINDING SITE FOR RESIDUE GNP E 201
12
BC3
SOFTWARE
SER F:17 , GNP F:201 , HOH F:406 , HOH F:407
BINDING SITE FOR RESIDUE MG F 202
13
BC4
SOFTWARE
GLY F:12 , GLY F:13 , VAL F:14 , GLY F:15 , LYS F:16 , SER F:17 , ALA F:18 , PHE F:28 , VAL F:29 , ASP F:30 , ALA F:59 , ASN F:116 , LYS F:117 , ASP F:119 , LEU F:120 , SER F:145 , ALA F:146 , MG F:202 , HOH F:406 , HOH F:407
BINDING SITE FOR RESIDUE GNP F 201
14
BC5
SOFTWARE
ARG A:123 , ASP A:126 , THR A:127 , LYS F:88 , GLU F:91 , ASP F:92 , HIS F:94 , HIS F:95
BINDING SITE FOR RESIDUE CIT F 301
[
close Site info
]
SAPs(SNPs)/Variants
(43, 231)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_065144 (K5E, chain A/B/C/D/E/F, )
02: VAR_064849 (K5N, chain A/B/C/D/E/F, )
03: VAR_036305 (G12A, chain A/B/C/D/E/F, )
04: VAR_RASK_HUMAN_CCDS8702_1_07 (G12A, chain A/B/C/D/E/F, )
05: VAR_006839 (G12C, chain A/B/C/D/E/F, )
06: VAR_016026 (G12D, chain A/B/C/D/E/F, )
07: VAR_RASK_HUMAN_CCDS8702_1_02 (G12D, chain A/B/C/D/E/F, )
08: VAR_RASK_HUMAN_CCDS8702_1_03 (G12D, chain A/B/C/D/E/F, )
09: VAR_RASK_HUMAN_CCDS8702_1_08 (G12D, chain A/B/C/D/E/F, )
10: VAR_RASK_HUMAN_CCDS8702_1_09 (G12D, chain A/B/C/D/E/F, )
11: VAR_016027 (G12R, chain A/B/C/D/E/F, )
12: VAR_016028 (G12S, chain A/B/C/D/E/F, )
13: VAR_RASK_HUMAN_CCDS8702_1_01 (G12S, chain A/B/C/D/E/F, )
14: VAR_006840 (G12V, chain A/B/C/D/E/F, )
15: VAR_RASK_HUMAN_CCDS8702_1_04 (G12V, chain A/B/C/D/E/F, )
16: VAR_RASK_HUMAN_CCDS8702_1_05 (G12V, chain A/B/C/D/E/F, )
17: VAR_RASK_HUMAN_CCDS8702_1_06 (G12V, chain A/B/C/D/E/F, )
18: VAR_016029 (G13D, chain A/B/C/D/E/F, )
19: VAR_RASK_HUMAN_CCDS8702_1_10 (G13D, chain A/B/C/D/E/F, )
20: VAR_RASK_HUMAN_CCDS8702_1_11 (G13D, chain A/B/C/D/E/F, )
21: VAR_RASK_HUMAN_CCDS8702_1_12 (G13D, chain A/B/C/D/E/F, )
22: VAR_065145 (G13R, chain A/B/C/D/E/F, )
23: VAR_026109 (V14I, chain A/B/C/D/E/F, )
24: VAR_064850 (Q22E, chain A/B/C/D/E/F, )
25: VAR_064851 (Q22R, chain A/B/C/D/E/F, )
26: VAR_064852 (P34L, chain A/B/C/E, )
27: VAR_064853 (P34Q, chain A/B/C/E, )
28: VAR_026110 (P34R, chain A/B/C/E, )
29: VAR_064854 (I36M, chain A/B/E, )
30: VAR_026111 (T58I, chain A/B/C/D/E/F, )
31: VAR_016030 (A59T, chain A/B/C/D/E/F, )
32: VAR_026112 (G60R, chain A/B/C/D/E, )
33: VAR_065146 (G60S, chain A/B/C/D/E, )
34: VAR_006841 (H61H, chain A, )
35: VAR_036306 (H61R, chain A, )
36: VAR_RASK_HUMAN_CCDS8702_1_13 (H61R, chain A, )
37: VAR_069784 (Y71H, chain A/B/C/E/F, )
38: VAR_036307 (K117N, chain A/B/C/D/E/F, )
39: VAR_RASK_HUMAN_CCDS8702_1_14 (K117N, chain A/B/C/D/E/F, )
40: VAR_036308 (A146T, chain A/B/C/D/E/F, )
41: VAR_RASK_HUMAN_CCDS8702_1_15 (A146T, chain A/B/C/D/E/F, )
42: VAR_RASK_HUMAN_CCDS8702_1_16 (A146T, chain A/B/C/D/E/F, )
43: VAR_069785 (K147E, chain A/B/C/D/E/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_065144
K
5
E
RASK_HUMAN
Disease (NS3)
---
A/B/C/D/E/F
K
5
E
02
UniProt
VAR_064849
K
5
N
RASK_HUMAN
Disease (GASC)
---
A/B/C/D/E/F
K
5
N
03
UniProt
VAR_036305
G
12
A
RASK_HUMAN
Unclassified
---
A/B/C/D/E/F
G
12
A
04
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_07
*
G
12
A
RASK_HUMAN
Disease (Colorectal cancer)
---
A/B/C/D/E/F
G
12
A
05
UniProt
VAR_006839
G
12
C
RASK_HUMAN
Unclassified
---
A/B/C/D/E/F
G
12
C
06
UniProt
VAR_016026
G
12
D
RASK_HUMAN
Unclassified
---
A/B/C/D/E/F
G
12
D
07
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_02
*
G
12
D
RASK_HUMAN
Disease (Colorectal cancer)
---
A/B/C/D/E/F
G
12
D
08
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_03
*
G
12
D
RASK_HUMAN
Disease (Colorectal cancer)
---
A/B/C/D/E/F
G
12
D
09
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_08
*
G
12
D
RASK_HUMAN
Disease (Colorectal cancer)
---
A/B/C/D/E/F
G
12
D
10
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_09
*
G
12
D
RASK_HUMAN
Disease (Colorectal cancer)
---
A/B/C/D/E/F
G
12
D
11
UniProt
VAR_016027
G
12
R
RASK_HUMAN
Unclassified
---
A/B/C/D/E/F
G
12
R
12
UniProt
VAR_016028
G
12
S
RASK_HUMAN
Unclassified
---
A/B/C/D/E/F
G
12
S
13
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_01
*
G
12
S
RASK_HUMAN
Disease (Colorectal cancer)
---
A/B/C/D/E/F
G
12
S
14
UniProt
VAR_006840
G
12
V
RASK_HUMAN
Unclassified
---
A/B/C/D/E/F
G
12
V
15
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_04
*
G
12
V
RASK_HUMAN
Disease (Colorectal cancer)
---
A/B/C/D/E/F
G
12
V
16
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_05
*
G
12
V
RASK_HUMAN
Disease (Colorectal cancer)
---
A/B/C/D/E/F
G
12
V
17
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_06
*
G
12
V
RASK_HUMAN
Disease (Colorectal cancer)
---
A/B/C/D/E/F
G
12
V
18
UniProt
VAR_016029
G
13
D
RASK_HUMAN
Disease (GASC)
---
A/B/C/D/E/F
G
13
D
19
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_10
*
G
13
D
RASK_HUMAN
Disease (Colorectal cancer)
---
A/B/C/D/E/F
G
13
D
20
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_11
*
G
13
D
RASK_HUMAN
Disease (Colorectal cancer)
---
A/B/C/D/E/F
G
13
D
21
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_12
*
G
13
D
RASK_HUMAN
Disease (Colorectal cancer)
---
A/B/C/D/E/F
G
13
D
22
UniProt
VAR_065145
G
13
R
RASK_HUMAN
Unclassified
---
A/B/C/D/E/F
G
13
R
23
UniProt
VAR_026109
V
14
I
RASK_HUMAN
Disease (NS3)
---
A/B/C/D/E/F
V
14
I
24
UniProt
VAR_064850
Q
22
E
RASK_HUMAN
Disease (CFC2)
---
A/B/C/D/E/F
Q
22
E
25
UniProt
VAR_064851
Q
22
R
RASK_HUMAN
Disease (NS3)
---
A/B/C/D/E/F
Q
22
R
26
UniProt
VAR_064852
P
34
L
RASK_HUMAN
Disease (NS3)
---
A/B/C/E
P
34
L
27
UniProt
VAR_064853
P
34
Q
RASK_HUMAN
Disease (NS3)
---
A/B/C/E
P
34
Q
28
UniProt
VAR_026110
P
34
R
RASK_HUMAN
Disease (CFC2)
---
A/B/C/E
P
34
R
29
UniProt
VAR_064854
I
36
M
RASK_HUMAN
Disease (NS3)
---
A/B/E
I
36
M
30
UniProt
VAR_026111
T
58
I
RASK_HUMAN
Disease (NS3)
---
A/B/C/D/E/F
T
58
I
31
UniProt
VAR_016030
A
59
T
RASK_HUMAN
Disease (GASC)
---
A/B/C/D/E/F
A
59
T
32
UniProt
VAR_026112
G
60
R
RASK_HUMAN
Disease (CFC2)
---
A/B/C/D/E
G
60
R
33
UniProt
VAR_065146
G
60
S
RASK_HUMAN
Disease (NS3)
---
A/B/C/D/E
G
60
S
34
UniProt
VAR_006841
Q
61
H
RASK_HUMAN
Unclassified
17851045
A
H
61
H
35
UniProt
VAR_036306
Q
61
R
RASK_HUMAN
Unclassified
---
A
H
61
R
36
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_13
*
Q
61
R
RASK_HUMAN
Disease (Colorectal cancer)
---
A
H
61
R
37
UniProt
VAR_069784
Y
71
H
RASK_HUMAN
Disease (CFC2)
---
A/B/C/E/F
Y
71
H
38
UniProt
VAR_036307
K
117
N
RASK_HUMAN
Unclassified
---
A/B/C/D/E/F
K
117
N
39
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_14
*
K
117
N
RASK_HUMAN
Disease (Colorectal cancer)
---
A/B/C/D/E/F
K
117
N
40
UniProt
VAR_036308
A
146
T
RASK_HUMAN
Unclassified
---
A/B/C/D/E/F
A
146
T
41
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_15
*
A
146
T
RASK_HUMAN
Disease (Colorectal cancer)
---
A/B/C/D/E/F
A
146
T
42
CancerSNP
VAR_RASK_HUMAN_CCDS8702_1_16
*
A
146
T
RASK_HUMAN
Disease (Colorectal cancer)
---
A/B/C/D/E/F
A
146
T
43
UniProt
VAR_069785
K
147
E
RASK_HUMAN
Disease (CFC2)
---
A/B/C/D/E/F
K
147
E
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: RAS (A:1-164,B:1-164,C:1-164,D:1-164,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RAS
PS51421
small GTPase Ras family profile.
RASK_HUMAN
1-189
6
A:1-164
B:1-164
C:1-164
D:1-164
E:1-164
F:1-164
[
close PROSITE info
]
Exons
(4, 24)
Info
All Exons
Exon 1.2a (A:1-37 | B:1-37 | C:1-35 | D:1-31 ...)
Exon 1.3 (A:38-97 | B:38-97 (gaps) | C:38-97...)
Exon 1.4 (A:97-150 | B:97-150 | C:97-150 | D...)
Exon 1.5b (A:151-167 | B:151-167 | C:151-167 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1/1.2a
2: Boundary 1.2a/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5b
5: Boundary 1.5b/1.6b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000256078
1
ENSE00001189804
chr12:
25403854-25403685
170
RASK_HUMAN
-
0
0
-
-
1.2a
ENST00000256078
2a
ENSE00000936617
chr12:
25398329-25398208
122
RASK_HUMAN
1-37
37
6
A:1-37
B:1-37
C:1-35
D:1-31
E:1-37
F:1-31
37
37
35
31
37
31
1.3
ENST00000256078
3
ENSE00001719809
chr12:
25380346-25380168
179
RASK_HUMAN
38-97
60
6
A:38-97
B:38-97 (gaps)
C:38-97 (gaps)
D:38-97 (gaps)
E:38-97 (gaps)
F:38-97 (gaps)
60
60
60
60
60
60
1.4
ENST00000256078
4
ENSE00001644818
chr12:
25378707-25378548
160
RASK_HUMAN
97-150
54
6
A:97-150
B:97-150
C:97-150
D:97-150
E:97-150
F:97-150
54
54
54
54
54
54
1.5b
ENST00000256078
5b
ENSE00001189807
chr12:
25368494-25368371
124
RASK_HUMAN
151-189
39
6
A:151-167
B:151-167
C:151-167
D:151-167
E:151-167
F:151-167
17
17
17
17
17
17
1.6b
ENST00000256078
6b
ENSE00001740851
chr12:
25362845-25358182
4664
RASK_HUMAN
-
0
0
-
-
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SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3gfta_ (A:)
1b: SCOP_d3gftb_ (B:)
1c: SCOP_d3gftc_ (C:)
1d: SCOP_d3gftd_ (D:)
1e: SCOP_d3gfte_ (E:)
1f: SCOP_d3gftf_ (F:)
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Protein Domains
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(
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
automated matches
(173)
Human (Homo sapiens) [TaxId: 9606]
(112)
1a
d3gfta_
A:
1b
d3gftb_
B:
1c
d3gftc_
C:
1d
d3gftd_
D:
1e
d3gfte_
E:
1f
d3gftf_
F:
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_3gftA00 (A:1-167)
1b: CATH_3gftB00 (B:-2-167)
1c: CATH_3gftC00 (C:-3-167)
1d: CATH_3gftE00 (E:-2-167)
1e: CATH_3gftF00 (F:-2-167)
1f: CATH_3gftD00 (D:1-167)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
3gftA00
A:1-167
1b
3gftB00
B:-2-167
1c
3gftC00
C:-3-167
1d
3gftE00
E:-2-167
1e
3gftF00
F:-2-167
1f
3gftD00
D:1-167
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Pfam Domains
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