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3FR2
Asym. Unit
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Asym.Unit (29 KB)
Biol.Unit 1 (25 KB)
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Title
:
N-BENZYL-INDOLO CARBOXYLIC ACIDS: DESIGN AND SYNTHESIS OF POTENT AND SELECTIVE ADIPOCYTE FATTY-ACID BINDING PROTEIN (A-FABP) INHIBITORS
Authors
:
T Barf, K. Hammer, F. Lehmann, S. Haile, E. Axen, C. Medina, L. Rondahl, J. Uppenberg, S. Svensson, T. Lundb Ck
Date
:
08 Jan 09 (Deposition) - 10 Mar 09 (Release) - 31 Mar 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Selective Adipocyte Fatty-Acid Binding Protein (A-Fabp) Inhibitors, Cytoplasm, Lipid-Binding, Nucleus, Phosphoprotein, Polymorphism, Transport, Lipid Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Barf, F. Lehmann, K. Hammer, S. Haile, E. Axen, C. Medina, J. Uppenberg, S. Svensson, L. Rondahl, T. Lundback
N-Benzyl-Indolo Carboxylic Acids: Design And Synthesis Of Potent And Selective Adipocyte Fatty-Acid Binding Protein (A-Fabp) Inhibitors.
Bioorg. Med. Chem. Lett. V. 19 1745 2009
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 9-BENZYL-2,3,4,9-TETRAHYDRO-1H-CAR... (8CAa)
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No.
Name
Count
Type
Full Name
1
8CA
1
Ligand/Ion
9-BENZYL-2,3,4,9-TETRAHYDRO-1H-CARBAZOLE-8-CARBOXYLICACID
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:16 , PRO A:38 , SER A:55 , LYS A:58 , ASP A:76 , ARG A:78 , CYS A:117 , ARG A:126 , TYR A:128 , HOH A:244 , HOH A:263 , HOH A:264
BINDING SITE FOR RESIDUE 8CA A 501
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_036320 (E22D, chain A, )
2: VAR_FABP4_HUMAN_CCDS6230_1_01 (E22D, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_036320
E
23
D
FABP4_HUMAN
Unclassified
---
A
E
22
D
2
CancerSNP
VAR_FABP4_HUMAN_CCDS6230_1_01
*
E
23
D
FABP4_HUMAN
Disease (Breast cancer)
---
A
E
22
D
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: FABP (A:6-23)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FABP
PS00214
Cytosolic fatty-acid binding proteins signature.
FABP4_HUMAN
7-24
1
A:6-23
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Exons
(4, 4)
Info
All Exons
Exon 1.1a (A:1-24)
Exon 1.2a (A:24-81)
Exon 1.3b (A:82-115)
Exon 1.4d (A:116-131)
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2a
3: Boundary 1.2a/1.3b
4: Boundary 1.3b/1.4d
5: Boundary 1.4d/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000256104
1a
ENSE00002139695
chr8:
82395498-82395330
169
FABP4_HUMAN
1-25
25
1
A:1-24
24
1.2a
ENST00000256104
2a
ENSE00000698161
chr8:
82392833-82392661
173
FABP4_HUMAN
25-82
58
1
A:24-81
58
1.3b
ENST00000256104
3b
ENSE00000698160
chr8:
82391750-82391649
102
FABP4_HUMAN
83-116
34
1
A:82-115
34
1.4d
ENST00000256104
4d
ENSE00000795008
chr8:
82391150-82390654
497
FABP4_HUMAN
117-132
16
1
A:116-131
16
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3fr2a_ (A:)
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Protein Domains
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(
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
Lipocalins
(514)
Superfamily
:
Lipocalins
(514)
Family
:
Fatty acid binding protein-like
(183)
Protein domain
:
Adipocyte lipid-binding protein, ALBP
(34)
Human (Homo sapiens) [TaxId: 9606]
(15)
1a
d3fr2a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3fr2A00 (A:1-131)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Lipocalin
(526)
Homologous Superfamily
:
[code=2.40.128.20, no name defined]
(352)
Human (Homo sapiens)
(91)
1a
3fr2A00
A:1-131
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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