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3FMR
Asym. Unit
Info
Asym.Unit (118 KB)
Biol.Unit 1 (59 KB)
Biol.Unit 2 (58 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN ENCEPHALITOZOON CUNICULI METHIONINE AMINOPEPTIDASE TYPE 2 WITH ANGIOGENESIS INHIBITOR TNP470 BOUND
Authors
:
J. J. Alvarado, M. Russell, A. Zhang, J. Adams, R. Toro, S. K. Burley, L. M S. C. Almo, New York Sgx Research Center For Structural Genomi (Nysgxrc)
Date
:
22 Dec 08 (Deposition) - 13 Jan 09 (Release) - 31 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.89
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Methionine Aminopeptidase Type2, Metap2, Metap2 Tnp470 Complex, Encephalitozoon Cuniculi, Structural Genomics, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Aminopeptidase, Cobalt, Hydrolase, Metal-Binding, Protease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
J. J. Alvarado, A. Nemkal, J. M. Sauder, M. Russell, D. E. Akiyoshi, W. Shi, S. C. Almo, L. M. Weiss
Structure Of A Microsporidian Methionine Aminopeptidase Typ 2 Complexed With Fumagillin And Tnp-470.
Mol. Biochem. Parasitol. V. 168 158 2009
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
1c: FE (III) ION (FEc)
1d: FE (III) ION (FEd)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
3a: (1R,2S,3S,4R)-4-HYDROXY-2-METHOXY-... (TN4a)
3b: (1R,2S,3S,4R)-4-HYDROXY-2-METHOXY-... (TN4b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FE
4
Ligand/Ion
FE (III) ION
2
SO4
4
Ligand/Ion
SULFATE ION
3
TN4
2
Ligand/Ion
(1R,2S,3S,4R)-4-HYDROXY-2-METHOXY-4-METHYL-3-[(2R,3R)-2-METHYL-3-(3-METHYLBUT-2-EN-1-YL)OXIRAN-2-YL]CYCLOHEXYL (CHLOROACETYL)CARBAMATE
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:141 , HIS A:210 , GLU A:243 , GLU A:339 , FE A:402 , TN4 A:451
BINDING SITE FOR RESIDUE FE A 401
02
AC2
SOFTWARE
ASP A:130 , ASP A:141 , GLU A:339 , FE A:401
BINDING SITE FOR RESIDUE FE A 402
03
AC3
SOFTWARE
HIS A:109 , ASP A:206 , LEU A:207 , HIS A:208 , HIS A:218 , GLU A:243 , TYR A:324 , FE A:401
BINDING SITE FOR RESIDUE TN4 A 451
04
AC4
SOFTWARE
ARG A:77 , ARG A:296
BINDING SITE FOR RESIDUE SO4 A 501
05
AC5
SOFTWARE
LYS A:88 , ARG B:77 , ARG B:296
BINDING SITE FOR RESIDUE SO4 A 502
06
AC6
SOFTWARE
LYS A:305 , ARG B:91 , PHE B:215
BINDING SITE FOR RESIDUE SO4 A 503
07
AC7
SOFTWARE
ASP B:141 , HIS B:210 , GLU B:243 , GLU B:339 , FE B:402 , TN4 B:451
BINDING SITE FOR RESIDUE FE B 401
08
AC8
SOFTWARE
ASP B:130 , ASP B:141 , GLU B:339 , FE B:401
BINDING SITE FOR RESIDUE FE B 402
09
AC9
SOFTWARE
PHE B:97 , HIS B:109 , ASP B:206 , LEU B:207 , HIS B:208 , ILE B:217 , HIS B:218 , GLU B:243 , TYR B:324 , FE B:401
BINDING SITE FOR RESIDUE TN4 B 451
10
BC1
SOFTWARE
LYS B:268 , LYS B:271
BINDING SITE FOR RESIDUE SO4 B 504
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_MAP2_ENCCU_001 (L288F, chain A/B, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_MAP2_ENCCU_001
*
L
288
F
MAP2_ENCCU
---
---
A/B
L
288
F
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: MAP_2 (A:125-141,B:125-141)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MAP_2
PS01202
Methionine aminopeptidase subfamily 2 signature.
MAP2_ENCCU
125-141
2
A:125-141
B:125-141
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3fmrA01 (A:43-250,A:331-354)
1b: CATH_3fmrB01 (B:43-250,B:331-354)
2a: CATH_3fmrA02 (A:251-330)
2b: CATH_3fmrB02 (B:251-330)
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Creatine Amidinohydrolase
(114)
Homologous Superfamily
:
Creatinase/methionine aminopeptidase superfamily
(114)
Encephalitozoon cuniculi. Organism_taxid: 6035. Strain: gb-m1.
(3)
1a
3fmrA01
A:43-250,A:331-354
1b
3fmrB01
B:43-250,B:331-354
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
Encephalitozoon cuniculi. Organism_taxid: 6035. Strain: gb-m1.
(3)
2a
3fmrA02
A:251-330
2b
3fmrB02
B:251-330
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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