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3FKS
Biol. Unit 2
Info
Asym.Unit (1.4 MB)
Biol.Unit 1 (514 KB)
Biol.Unit 2 (496 KB)
Biol.Unit 3 (478 KB)
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(1)
Title
:
YEAST F1 ATPASE IN THE ABSENCE OF BOUND NUCLEOTIDES
Authors
:
V. Kabaleeswaran, J. Symersky, H. Shen, J. E. Walker, A. G. W. Leslie, D. M. Mueller
Date
:
17 Dec 08 (Deposition) - 03 Mar 09 (Release) - 28 Apr 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.59
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,1
Biol. Unit 1: A,B,C,D,E,F,G,H,I (1x)
Biol. Unit 2: J,K,L,M,N,O,P,Q,R (1x)
Biol. Unit 3: S,T,U,V,W,X,Y,Z,1 (1x)
Keywords
:
Atp Synthase, Atp Phosphatase, F1F0 Atpase, Atp Synthesis, Atp-Binding, Cf(1), Hydrogen Ion Transport, Ion Transport, Membrane, Mitochondrion, Mitochondrion Inner Membrane, Nucleotide-Binding, Phosphoprotein, Transport, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Kabaleeswaran, H. Shen, J. Symersky, J. E. Walker, A. G. Leslie, D. M. Mueller
Asymmetric Structure Of The Yeast F1 Atpase In The Absence Of Bound Nucleotides.
J. Biol. Chem. V. 284 10546 2009
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: PHOSPHATE ION (PO4a)
1b: PHOSPHATE ION (PO4b)
1c: PHOSPHATE ION (PO4c)
1d: PHOSPHATE ION (PO4d)
1e: PHOSPHATE ION (PO4e)
1f: PHOSPHATE ION (PO4f)
1g: PHOSPHATE ION (PO4g)
1h: PHOSPHATE ION (PO4h)
1i: PHOSPHATE ION (PO4i)
1j: PHOSPHATE ION (PO4j)
1k: PHOSPHATE ION (PO4k)
1l: PHOSPHATE ION (PO4l)
1m: PHOSPHATE ION (PO4m)
1n: PHOSPHATE ION (PO4n)
1o: PHOSPHATE ION (PO4o)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PO4
6
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
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Sites
(6, 6)
Info
All Sites
1: AC6 (SOFTWARE)
2: AC7 (SOFTWARE)
3: AC8 (SOFTWARE)
4: AC9 (SOFTWARE)
5: BC1 (SOFTWARE)
6: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC6
SOFTWARE
GLN J:174 , THR J:175 , GLY J:176 , LYS J:177 , THR J:178
BINDING SITE FOR RESIDUE PO4 J 606
2
AC7
SOFTWARE
GLN K:174 , THR K:175 , GLY K:176 , LYS K:177 , THR K:178
BINDING SITE FOR RESIDUE PO4 K 607
3
AC8
SOFTWARE
ASP L:172 , GLN L:174 , THR L:175 , GLY L:176 , LYS L:177 , THR L:178
BINDING SITE FOR RESIDUE PO4 L 608
4
AC9
SOFTWARE
ARG L:375 , GLY M:160 , VAL M:161 , GLY M:162 , LYS M:163 , THR M:164 , ARG M:190
BINDING SITE FOR RESIDUE PO4 M 609
5
BC1
SOFTWARE
ARG J:375 , LYS N:163 , ARG N:190 , ASP N:256 , ASN N:257 , ARG N:260
BINDING SITE FOR RESIDUE PO4 N 610
6
BC2
SOFTWARE
ARG K:375 , GLY O:158 , GLY O:160 , VAL O:161 , GLY O:162 , LYS O:163 , THR O:164 , ARG O:190
BINDING SITE FOR RESIDUE PO4 O 611
[
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]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_ATPG_YEAST_001 (S174I, chain P, )
2: VAR_ATPG_YEAST_002 (S275F, chain P, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_ATPG_YEAST_001
*
S
207
I
ATPG_YEAST
---
---
P
S
174
I
2
UniProt
VAR_ATPG_YEAST_002
*
S
308
F
ATPG_YEAST
---
---
P
S
275
F
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 7)
Info
All PROSITE Patterns/Profiles
1: ATPASE_GAMMA (P:263-276)
2: ATPASE_ALPHA_BETA (M:346-355,N:346-355,O:346-355)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ATPASE_GAMMA
PS00153
ATP synthase gamma subunit signature.
ATPG_YEAST
296-309
1
-
P:263-276
-
2
ATPASE_ALPHA_BETA
PS00152
ATP synthase alpha and beta subunits signature.
ATPB_YEAST
379-388
3
-
-
-
M:346-355
N:346-355
O:346-355
-
-
-
ATPA_YEAST
400-409
3
-
-
-
J:365-374
K:365-374
L:365-374
-
-
-
[
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]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
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CATH Domains
(6, 57)
Info
all CATH domains
1a: CATH_3fksV02 (V:83-357)
1b: CATH_3fksT02 (T:96-381)
1c: CATH_3fksU02 (U:96-381)
1d: CATH_3fksA02 (A:96-381)
1e: CATH_3fksB02 (B:96-381)
1f: CATH_3fksC02 (C:96-381)
1g: CATH_3fksJ02 (J:96-381)
1h: CATH_3fksK02 (K:96-381)
1i: CATH_3fksL02 (L:96-381)
1j: CATH_3fksS02 (S:96-381)
1k: CATH_3fksD02 (D:83-357)
1l: CATH_3fksE02 (E:83-357)
1m: CATH_3fksF02 (F:83-357)
1n: CATH_3fksM02 (M:83-357)
1o: CATH_3fksN02 (N:83-357)
1p: CATH_3fksO02 (O:83-357)
1q: CATH_3fksW02 (W:83-357)
1r: CATH_3fksX02 (X:83-357)
2a: CATH_3fksN03 (N:358-474)
2b: CATH_3fksV03 (V:358-474)
2c: CATH_3fksW03 (W:358-473)
2d: CATH_3fksE03 (E:358-475)
2e: CATH_3fksF03 (F:358-475)
2f: CATH_3fksM03 (M:358-475)
2g: CATH_3fksO03 (O:358-475)
2h: CATH_3fksX03 (X:358-475)
2i: CATH_3fksD03 (D:358-474)
3a: CATH_3fksG01 (G:1-25,G:237-276)
3b: CATH_3fksP01 (P:1-25,P:237-276)
3c: CATH_3fksY01 (Y:1-25,Y:237-272)
4a: CATH_3fksC03 (C:382-509)
4b: CATH_3fksL03 (L:382-509)
4c: CATH_3fksA03 (A:382-509)
4d: CATH_3fksS03 (S:382-509)
4e: CATH_3fksJ03 (J:382-509)
4f: CATH_3fksB03 (B:382-506)
4g: CATH_3fksU03 (U:382-509)
4h: CATH_3fksK03 (K:382-505)
4i: CATH_3fksT03 (T:382-509)
5a: CATH_3fksA01 (A:24-95)
5b: CATH_3fksB01 (B:25-95)
5c: CATH_3fksT01 (T:25-95)
5d: CATH_3fksC01 (C:26-95)
5e: CATH_3fksJ01 (J:26-95)
5f: CATH_3fksL01 (L:26-95)
5g: CATH_3fksU01 (U:26-95)
5h: CATH_3fksK01 (K:18-95)
5i: CATH_3fksS01 (S:27-95)
6a: CATH_3fksE01 (E:8-82)
6b: CATH_3fksN01 (N:8-82)
6c: CATH_3fksW01 (W:8-82)
6d: CATH_3fksM01 (M:7-82)
6e: CATH_3fksO01 (O:7-82)
6f: CATH_3fksV01 (V:7-82)
6g: CATH_3fksX01 (X:7-82)
6h: CATH_3fksD01 (D:6-82)
6i: CATH_3fksF01 (F:5-82)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Yeast (Saccharomyces cerevisiae)
(4)
1a
3fksV02
V:83-357
1b
3fksT02
T:96-381
1c
3fksU02
U:96-381
1d
3fksA02
A:96-381
1e
3fksB02
B:96-381
1f
3fksC02
C:96-381
1g
3fksJ02
J:96-381
1h
3fksK02
K:96-381
1i
3fksL02
L:96-381
1j
3fksS02
S:96-381
1k
3fksD02
D:83-357
1l
3fksE02
E:83-357
1m
3fksF02
F:83-357
1n
3fksM02
M:83-357
1o
3fksN02
N:83-357
1p
3fksO02
O:83-357
1q
3fksW02
W:83-357
1r
3fksX02
X:83-357
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3
(32)
Homologous Superfamily
:
Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3
(32)
Yeast (Saccharomyces cerevisiae)
(1)
2a
3fksN03
N:358-474
2b
3fksV03
V:358-474
2c
3fksW03
W:358-473
2d
3fksE03
E:358-475
2e
3fksF03
F:358-475
2f
3fksM03
M:358-475
2g
3fksO03
O:358-475
2h
3fksX03
X:358-475
2i
3fksD03
D:358-474
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
[code=1.10.287.80, no name defined]
(43)
Yeast (Saccharomyces cerevisiae)
(1)
3a
3fksG01
G:1-25,G:237-276
3b
3fksP01
P:1-25,P:237-276
3c
3fksY01
Y:1-25,Y:237-272
Architecture
:
Up-down Bundle
(3216)
Topology
:
Lysin
(39)
Homologous Superfamily
:
[code=1.20.150.20, no name defined]
(33)
Yeast (Saccharomyces cerevisiae)
(1)
4a
3fksC03
C:382-509
4b
3fksL03
L:382-509
4c
3fksA03
A:382-509
4d
3fksS03
S:382-509
4e
3fksJ03
J:382-509
4f
3fksB03
B:382-506
4g
3fksU03
U:382-509
4h
3fksK03
K:382-505
4i
3fksT03
T:382-509
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
[code=2.40.30.20, no name defined]
(40)
Yeast (Saccharomyces cerevisiae)
(1)
5a
3fksA01
A:24-95
5b
3fksB01
B:25-95
5c
3fksT01
T:25-95
5d
3fksC01
C:26-95
5e
3fksJ01
J:26-95
5f
3fksL01
L:26-95
5g
3fksU01
U:26-95
5h
3fksK01
K:18-95
5i
3fksS01
S:27-95
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
[code=2.40.10.170, no name defined]
(33)
Yeast (Saccharomyces cerevisiae)
(1)
6a
3fksE01
E:8-82
6b
3fksN01
N:8-82
6c
3fksW01
W:8-82
6d
3fksM01
M:7-82
6e
3fksO01
O:7-82
6f
3fksV01
V:7-82
6g
3fksX01
X:7-82
6h
3fksD01
D:6-82
6i
3fksF01
F:5-82
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (1.4 MB)
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Biol.Unit 1 (514 KB)
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