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3F9K
Biol. Unit 14
Info
Asym.Unit (949 KB)
Biol.Unit 1 (89 KB)
Biol.Unit 10 (90 KB)
Biol.Unit 11 (89 KB)
Biol.Unit 12 (90 KB)
Biol.Unit 13 (244 KB)
Biol.Unit 14 (242 KB)
Biol.Unit 15 (243 KB)
Biol.Unit 16 (244 KB)
Biol.Unit 2 (90 KB)
Biol.Unit 3 (89 KB)
Biol.Unit 4 (90 KB)
Biol.Unit 5 (89 KB)
Biol.Unit 6 (89 KB)
Biol.Unit 7 (89 KB)
Biol.Unit 8 (90 KB)
Biol.Unit 9 (90 KB)
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Title
:
TWO DOMAIN FRAGMENT OF HIV-2 INTEGRASE IN COMPLEX WITH LEDGF IBD
Authors
:
S. Hare, P. Cherepanov
Date
:
14 Nov 08 (Deposition) - 20 Jan 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,E,F,G,I,J,K,M,N,O,Q,R,S,U,V,W,Y,Z,a,c,d,e,g,h,i,k,l,m,o,p,q,s,t,u
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: E,F,G (1x)
Biol. Unit 3: I,J,K (1x)
Biol. Unit 4: M,N,O (1x)
Biol. Unit 5: Q,R,S (1x)
Biol. Unit 6: U,V,W (1x)
Biol. Unit 7: Y,Z,a (1x)
Biol. Unit 8: c,d,e (1x)
Biol. Unit 9: g,h,i (1x)
Biol. Unit 10: k,l,m (1x)
Biol. Unit 11: o,p,q (1x)
Biol. Unit 12: s,t,u (1x)
Biol. Unit 13: E,F,G,U,V,W,g,h,i (1x)
Biol. Unit 14: A,B,C,I,J,K,Y,Z,a (1x)
Biol. Unit 15: k,l,m,o,p,q,s,t,u (1x)
Biol. Unit 16: M,N,O,Q,R,S,c,d,e (1x)
Keywords
:
Protein-Protein Complex, Aids, Dna Integration, Endonuclease, Magnesium, Metal-Binding, Multifunctional Enzyme, Nuclease, Nucleotidyltransferase, Nucleus, Transferase, Viral Nucleoprotein, Virion, Dna-Binding, Host-Virus Interaction, Transcription, Transcription Regulation, Zinc Binding, Hhcc Motif, Viral Protein, Recombination
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Hare, M. C. Shun, S. S. Gupta, E. Valkov, A. Engelman, P. Cherepanov
A Novel Co-Crystal Structure Affords The Design Of Gain-Of-Function Lentiviral Integrase Mutants In The Presence Of Modified Psip1/Ledgf/P75
Plos Pathog. V. 5 E1000 2009
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
1g: MAGNESIUM ION (MGg)
1h: MAGNESIUM ION (MGh)
1i: MAGNESIUM ION (MGi)
1j: MAGNESIUM ION (MGj)
1k: MAGNESIUM ION (MGk)
1l: MAGNESIUM ION (MGl)
1m: MAGNESIUM ION (MGm)
1n: MAGNESIUM ION (MGn)
1o: MAGNESIUM ION (MGo)
1p: MAGNESIUM ION (MGp)
1q: MAGNESIUM ION (MGq)
1r: MAGNESIUM ION (MGr)
1s: MAGNESIUM ION (MGs)
1t: MAGNESIUM ION (MGt)
1u: MAGNESIUM ION (MGu)
1v: MAGNESIUM ION (MGv)
1w: MAGNESIUM ION (MGw)
1x: MAGNESIUM ION (MGx)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
2g: ZINC ION (ZNg)
2h: ZINC ION (ZNh)
2i: ZINC ION (ZNi)
2j: ZINC ION (ZNj)
2k: ZINC ION (ZNk)
2l: ZINC ION (ZNl)
2m: ZINC ION (ZNm)
2n: ZINC ION (ZNn)
2o: ZINC ION (ZNo)
2p: ZINC ION (ZNp)
2q: ZINC ION (ZNq)
2r: ZINC ION (ZNr)
2s: ZINC ION (ZNs)
2t: ZINC ION (ZNt)
2u: ZINC ION (ZNu)
2v: ZINC ION (ZNv)
2w: ZINC ION (ZNw)
2x: ZINC ION (ZNx)
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC9 (SOFTWARE)
06: BC1 (SOFTWARE)
07: BC2 (SOFTWARE)
08: BC3 (SOFTWARE)
09: CC7 (SOFTWARE)
10: CC8 (SOFTWARE)
11: CC9 (SOFTWARE)
12: DC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:12 , HIS A:16 , CYS A:40 , CYS A:43
BINDING SITE FOR RESIDUE ZN A 210
02
AC2
SOFTWARE
ASP A:64 , ASP A:116
BINDING SITE FOR RESIDUE MG A 211
03
AC3
SOFTWARE
HIS B:12 , HIS B:16 , CYS B:40 , CYS B:43
BINDING SITE FOR RESIDUE ZN B 210
04
AC4
SOFTWARE
ASP B:64 , ASP B:116 , GLU e:375
BINDING SITE FOR RESIDUE MG B 211
05
AC9
SOFTWARE
HIS I:12 , HIS I:16 , CYS I:40 , CYS I:43
BINDING SITE FOR RESIDUE ZN I 210
06
BC1
SOFTWARE
ASP I:64 , ASP I:116
BINDING SITE FOR RESIDUE MG I 211
07
BC2
SOFTWARE
HIS J:12 , HIS J:16 , CYS J:40 , CYS J:43
BINDING SITE FOR RESIDUE ZN J 210
08
BC3
SOFTWARE
ASP J:64 , ASP J:116 , GLU W:375
BINDING SITE FOR RESIDUE MG J 211
09
CC7
SOFTWARE
HIS Y:12 , HIS Y:16 , CYS Y:40 , CYS Y:43
BINDING SITE FOR RESIDUE ZN Y 210
10
CC8
SOFTWARE
ASP Y:64 , ASP Y:116
BINDING SITE FOR RESIDUE MG Y 211
11
CC9
SOFTWARE
HIS Z:12 , HIS Z:16 , CYS Z:40 , CYS Z:43
BINDING SITE FOR RESIDUE ZN Z 210
12
DC1
SOFTWARE
ASP Z:64 , ASP Z:116
BINDING SITE FOR RESIDUE MG Z 211
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 9)
Info
All PROSITE Patterns/Profiles
1: ZF_INTEGRASE (B:3-43,J:3-43,Z:3-43)
2: INTEGRASE (A:53-204,B:54-204,I:53-204,J:54-20...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_INTEGRASE
PS50876
Zinc finger integrase-type profile.
POL_HV2RO
1174-1215
3
B:3-43
-
J:3-43
-
-
-
Z:3-43
-
-
-
-
-
2
INTEGRASE
PS50994
Integrase catalytic domain profile.
POL_HV2RO
1224-1375
6
A:53-204
B:54-204
-
-
I:53-204
J:54-204
-
-
-
-
-
-
Y:53-204
Z:54-204
-
-
-
-
-
-
-
-
-
-
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
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all PFAM domains
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Nucleic
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Chain C
Chain I
Chain J
Chain K
Chain Y
Chain Z
Chain a
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (949 KB)
Header - Asym.Unit
Biol.Unit 1 (89 KB)
Header - Biol.Unit 1
Biol.Unit 10 (90 KB)
Header - Biol.Unit 10
Biol.Unit 11 (89 KB)
Header - Biol.Unit 11
Biol.Unit 12 (90 KB)
Header - Biol.Unit 12
Biol.Unit 13 (244 KB)
Header - Biol.Unit 13
Biol.Unit 14 (242 KB)
Header - Biol.Unit 14
Biol.Unit 15 (243 KB)
Header - Biol.Unit 15
Biol.Unit 16 (244 KB)
Header - Biol.Unit 16
Biol.Unit 2 (90 KB)
Header - Biol.Unit 2
Biol.Unit 3 (89 KB)
Header - Biol.Unit 3
Biol.Unit 4 (90 KB)
Header - Biol.Unit 4
Biol.Unit 5 (89 KB)
Header - Biol.Unit 5
Biol.Unit 6 (89 KB)
Header - Biol.Unit 6
Biol.Unit 7 (89 KB)
Header - Biol.Unit 7
Biol.Unit 8 (90 KB)
Header - Biol.Unit 8
Biol.Unit 9 (90 KB)
Header - Biol.Unit 9
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