PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3F81
Asym. Unit
Info
Asym.Unit (66 KB)
Biol.Unit 1 (61 KB)
Biol.Unit 2 (62 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
INTERACTION OF VHR WITH SA3
Authors
:
S. Wu, T. Mutelin, L. Tautz
Date
:
11 Nov 08 (Deposition) - 10 Nov 09 (Release) - 17 Nov 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (2x)
Biol. Unit 2: B (2x)
Keywords
:
Hydrolase, Protein Dual-Specificity Phosphatase, Inhibitor, Protein Phosphatase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Wu, S. Vossius, S. Rahmouni, A. V. Miletic, T. Vang, J. Vazquez-Rodriguez, F. Cerignoli, Y. Arimura, S. Williams, T. Hayes, M. Moutschen, S. Vasile, M. Pellecchia, T. Mustelin, L. Tautz
Multidentate Small-Molecule Inhibitors Of Vaccinia H1-Related (Vhr) Phosphatase Decrease Proliferation Of Cervix Cancer Cells.
J. Med. Chem. V. 52 6716 2009
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 2)
Info
All Hetero Components
1a: 2-(5-METHYL-4-OXO-2-THIOXO-2,4-DIH... (STTa)
1b: 2-(5-METHYL-4-OXO-2-THIOXO-2,4-DIH... (STTb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
STT
2
Ligand/Ion
2-(5-METHYL-4-OXO-2-THIOXO-2,4-DIHYDRO-3H-1LAMBDA~4~,3-THIAZOL-3-YL)ETHANESULFONIC ACID
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MET A:69 , ASP A:92 , CYS A:124 , ARG A:125 , GLU A:126 , TYR A:128 , SER A:129 , ARG A:130 , GLN B:115
BINDING SITE FOR RESIDUE STT A 1
2
AC2
SOFTWARE
ASN A:117 , MET B:69 , ASP B:92 , CYS B:124 , ARG B:125 , GLU B:126 , TYR B:128 , SER B:129 , ARG B:130 , HOH B:240 , HOH B:307
BINDING SITE FOR RESIDUE STT B 1
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: TYR_PHOSPHATASE_DUAL (A:32-178,B:32-178)
2: TYR_PHOSPHATASE_2 (A:99-158,B:99-158)
3: TYR_PHOSPHATASE_1 (A:122-132,B:122-132)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TYR_PHOSPHATASE_DUAL
PS50054
Dual specificity protein phosphatase family profile.
DUS3_HUMAN
32-178
2
A:32-178
B:32-178
2
TYR_PHOSPHATASE_2
PS50056
Tyrosine specific protein phosphatases family profile.
DUS3_HUMAN
99-158
2
A:99-158
B:99-158
3
TYR_PHOSPHATASE_1
PS00383
Tyrosine specific protein phosphatases active site.
DUS3_HUMAN
122-132
2
A:122-132
B:122-132
[
close PROSITE info
]
Exons
(3, 6)
Info
All Exons
Exon 1.1 (A:7-42 | B:7-42)
Exon 1.2 (A:42-118 | B:42-118)
Exon 1.3 (A:118-185 | B:118-185)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000226004
1
ENSE00000854206
chr17:
41856368-41856168
201
DUS3_HUMAN
1-42
42
2
A:7-42
B:7-42
36
36
1.2
ENST00000226004
2
ENSE00000731379
chr17:
41852306-41852080
227
DUS3_HUMAN
42-118
77
2
A:42-118
B:42-118
77
77
1.3
ENST00000226004
3
ENSE00001292277
chr17:
41847182-41843490
3693
DUS3_HUMAN
118-185
68
2
A:118-185
B:118-185
68
68
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3f81a_ (A:)
1b: SCOP_d3f81b_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
(Phosphotyrosine protein) phosphatases II
(296)
Superfamily
:
(Phosphotyrosine protein) phosphatases II
(296)
Family
:
Dual specificity phosphatase-like
(27)
Protein domain
:
automated matches
(8)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d3f81a_
A:
1b
d3f81b_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3f81A00 (A:7-185)
1b: CATH_3f81B00 (B:7-185)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Protein-Tyrosine Phosphatase; Chain A
(262)
Homologous Superfamily
:
Protein tyrosine phosphatase superfamily
(228)
Human (Homo sapiens)
(196)
1a
3f81A00
A:7-185
1b
3f81B00
B:7-185
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (66 KB)
Header - Asym.Unit
Biol.Unit 1 (61 KB)
Header - Biol.Unit 1
Biol.Unit 2 (62 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3F81
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
