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3F1P
Biol. Unit 1
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Asym.Unit (133 KB)
Biol.Unit 1 (129 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A HIGH AFFINITY HETERODIMER OF HIF2 ALPHA AND ARNT C-TERMINAL PAS DOMAINS
Authors
:
T. H. Scheuermann, D. R. Tomchick, M. Machius, Y. Guo, R. K. Bruick, K. H. Gardner
Date
:
28 Oct 08 (Deposition) - 20 Jan 09 (Release) - 17 Mar 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.17
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Pas Domain, Heterodimer, Internal Cavity, Activator, Angiogenesis, Congenital Erythrocytosis, Developmental Protein, Differentiation, Disease Mutation, Dna-Binding, Hydroxylation, Nucleus, Phosphoprotein, Transcription, Transcription Regulation, Ubl Conjugation, Alternative Splicing, Polymorphism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. H. Scheuermann, D. R. Tomchick, M. Machius, Y. Guo, R. K. Bruick, K. H. Gardner
Artificial Ligand Binding Within The Hif2Alpha Pas-B Domain Of The Hif2 Transcription Factor.
Proc. Natl. Acad. Sci. Usa V. 106 450 2009
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(2, 2)
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(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_024280 (R430Q, chain B, )
2: VAR_049537 (E435K, chain B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024280
R
430
Q
ARNT_HUMAN
Polymorphism
2229175
B
R
430
Q
2
UniProt
VAR_049537
E
435
K
ARNT_HUMAN
Polymorphism
2229176
B
E
435
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PAS (A:249-300)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PAS
PS50112
PAS repeat profile.
EPAS1_HUMAN
92-147
249-300
1
-
A:249-300
ARNT_HUMAN
161-235
368-419
1
-
B:368-419
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Exons
(0, 0)
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3f1pb_ (B:)
2a: SCOP_d3f1pa_ (A:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Profilin-like
(304)
Superfamily
:
PYP-like sensor domain (PAS domain)
(163)
Family
:
automated matches
(33)
Protein domain
:
automated matches
(33)
Human (Homo sapiens) [TaxId: 9606]
(15)
1a
d3f1pb_
B:
Family
:
Hypoxia-inducible factor Hif2a, C-terminal domain
(10)
Protein domain
:
automated matches
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
2a
d3f1pa_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_3f1pA00 (A:236-349)
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Beta-Lactamase
(202)
Homologous Superfamily
:
[code=3.30.450.20, no name defined]
(117)
Human (Homo sapiens)
(9)
1a
3f1pA00
A:236-349
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (133 KB)
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