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3EIQ
Asym. Unit
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Asym.Unit (170 KB)
Biol.Unit 1 (161 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PDCD4-EIF4A
Authors
:
P. G. Loh, Z. Cheng, H. Song
Date
:
17 Sep 08 (Deposition) - 24 Feb 09 (Release) - 16 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.50
Chains
:
Asym. Unit : A,C,D
Biol. Unit 1: A,C,D (1x)
Keywords
:
Pdcd4, Anti-Oncogene, Apoptosis, Cell Cycle, Nucleus, Phosphoprotein, Rna-Binding, Atp-Binding, Helicase, Hydrolase, Initiation Factor, Nucleotide-Binding, Protein Biosynthesis, Antitumor Protein, Translation, Hydrolase-Antitumor Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. G. Loh, H. S. Yang, M. A. Walsh, Q. Wang, X. Wang, Z. Cheng, D. Liu, H. Song
Structural Basis For Translational Inhibition By The Tumour Suppressor Pdcd4
Embo J. V. 28 274 2009
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: Q_MOTIF (A:32-60,D:32-60)
2: MI (C:163-283|C:326-449)
3: DEAD_ATP_HELICASE (A:180-188,D:180-188)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
Q_MOTIF
PS51195
DEAD-box RNA helicase Q motif profile.
IF4A1_HUMAN
32-60
2
A:32-60
D:32-60
2
MI
PS51366
MI domain profile.
PDCD4_MOUSE
163-284
326-449
2
C:163-283
C:326-449
3
DEAD_ATP_HELICASE
PS00039
DEAD-box subfamily ATP-dependent helicases signature.
IF4A1_HUMAN
180-188
2
A:180-188
D:180-188
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Exons
(10, 20)
Info
All Exons
Exon 1.2 (A:22-24 | D:22-24)
Exon 1.3 (A:25-69 | D:25-69)
Exon 1.4a (A:69-115 | D:69-115)
Exon 1.5 (A:116-172 | D:116-172)
Exon 1.6 (A:172-208 | D:172-208)
Exon 1.7 (A:209-256 | D:209-256)
Exon 1.8 (A:257-302 | D:257-302)
Exon 1.9 (A:306-332 (gaps) | D:305-332 (gaps...)
Exon 1.10 (A:333-359 (gaps) | D:333-359)
Exon 1.11 (A:359-400 (gaps) | D:359-400)
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All Exon Boundaries
01: Boundary 1.1a/1.2
02: Boundary 1.2/1.3
03: Boundary 1.3/1.4a
04: Boundary 1.4a/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10
10: Boundary 1.10/1.11
11: Boundary 1.11/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000293831
1a
ENSE00001710114
chr17:
7476024-7476182
159
IF4A1_HUMAN
1-8
8
0
-
-
1.2
ENST00000293831
2
ENSE00001631751
chr17:
7477578-7477626
49
IF4A1_HUMAN
8-24
17
2
A:22-24
D:22-24
3
3
1.3
ENST00000293831
3
ENSE00001762686
chr17:
7477864-7477996
133
IF4A1_HUMAN
25-69
45
2
A:25-69
D:25-69
45
45
1.4a
ENST00000293831
4a
ENSE00001726391
chr17:
7478437-7478576
140
IF4A1_HUMAN
69-115
47
2
A:69-115
D:69-115
47
47
1.5
ENST00000293831
5
ENSE00001061690
chr17:
7479842-7480010
169
IF4A1_HUMAN
116-172
57
2
A:116-172
D:116-172
57
57
1.6
ENST00000293831
6
ENSE00001061689
chr17:
7480374-7480483
110
IF4A1_HUMAN
172-208
37
2
A:172-208
D:172-208
37
37
1.7
ENST00000293831
7
ENSE00001061692
chr17:
7480662-7480805
144
IF4A1_HUMAN
209-256
48
2
A:209-256
D:209-256
48
48
1.8
ENST00000293831
8
ENSE00001799518
chr17:
7480887-7481024
138
IF4A1_HUMAN
257-302
46
2
A:257-302
D:257-302
46
46
1.9
ENST00000293831
9
ENSE00001061685
chr17:
7481145-7481234
90
IF4A1_HUMAN
303-332
30
2
A:306-332 (gaps)
D:305-332 (gaps)
27
28
1.10
ENST00000293831
10
ENSE00001061694
chr17:
7481483-7481562
80
IF4A1_HUMAN
333-359
27
2
A:333-359 (gaps)
D:333-359
27
27
1.11
ENST00000293831
11
ENSE00001485271
chr17:
7481660-7482324
665
IF4A1_HUMAN
359-406
48
2
A:359-400 (gaps)
D:359-400
42
42
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Asymmetric Unit 1
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