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3EHQ
Asym. Unit
Info
Asym.Unit (64 KB)
Biol.Unit 1 (31 KB)
Biol.Unit 2 (31 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN OSTEOCLAST STIMULATING FACTOR
Authors
:
S. Tong, H. Zhou, Y. Gao, Z. Zhu, X. Zhang, M. Teng, L. Niu
Date
:
14 Sep 08 (Deposition) - 04 Aug 09 (Release) - 04 Aug 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.57
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Beta Barrel, Helix-Turn-Helix, Sh3, Ankyrin Repeat, Ank Repeat, Cytoplasm, Phosphoprotein, Polymorphism, Sh3 Domain, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Tong, H. Zhou, Y. Gao, Z. Zhu, X. Zhang, M. Teng, L. Niu
Crystal Structure Of Human Osteoclast Stimulating Factor
Proteins V. 75 245 2009
(for further references see the
PDB file header
)
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
2
MSE
6
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_048309 (N48S, chain A/B, )
2: VAR_026573 (L159F, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_048309
N
48
S
OSTF1_HUMAN
Polymorphism
2295862
A/B
N
48
S
2
UniProt
VAR_026573
L
159
F
OSTF1_HUMAN
Polymorphism
17850197
A/B
L
159
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: SH3 (A:12-71,B:12-71)
2: ANK_REP_REGION (A:72-171,B:72-171)
3: ANK_REPEAT (A:139-171,B:139-171)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH3
PS50002
Src homology 3 (SH3) domain profile.
OSTF1_HUMAN
12-71
2
A:12-71
B:12-71
2
ANK_REP_REGION
PS50297
Ankyrin repeat region circular profile.
OSTF1_HUMAN
72-171
2
A:72-171
B:72-171
3
ANK_REPEAT
PS50088
Ankyrin repeat profile.
OSTF1_HUMAN
139-171
2
A:139-171
B:139-171
[
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Exons
(9, 18)
Info
All Exons
Exon 1.1 (A:12-12 | B:12-12)
Exon 1.2 (A:12-27 | B:12-27)
Exon 1.3 (A:28-44 | B:28-44)
Exon 1.4 (A:45-66 | B:45-66)
Exon 1.5 (A:66-84 | B:66-84)
Exon 1.6 (A:84-120 | B:84-120)
Exon 1.7 (A:120-136 | B:120-136)
Exon 1.8 (A:137-163 | B:137-163)
Exon 1.9 (A:163-193 | B:163-192)
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All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000346234
1
ENSE00001428405
chr9:
77703459-77703642
184
OSTF1_HUMAN
1-12
12
2
A:12-12
B:12-12
1
1
1.2
ENST00000346234
2
ENSE00001023928
chr9:
77732420-77732466
47
OSTF1_HUMAN
12-27
16
2
A:12-27
B:12-27
16
16
1.3
ENST00000346234
3
ENSE00001198586
chr9:
77742485-77742535
51
OSTF1_HUMAN
28-44
17
2
A:28-44
B:28-44
17
17
1.4
ENST00000346234
4
ENSE00000707172
chr9:
77745494-77745557
64
OSTF1_HUMAN
45-66
22
2
A:45-66
B:45-66
22
22
1.5
ENST00000346234
5
ENSE00000803850
chr9:
77746686-77746739
54
OSTF1_HUMAN
66-84
19
2
A:66-84
B:66-84
19
19
1.6
ENST00000346234
6
ENSE00000707175
chr9:
77748210-77748317
108
OSTF1_HUMAN
84-120
37
2
A:84-120
B:84-120
37
37
1.7
ENST00000346234
7
ENSE00000803852
chr9:
77749262-77749311
50
OSTF1_HUMAN
120-136
17
2
A:120-136
B:120-136
17
17
1.8
ENST00000346234
8
ENSE00000803853
chr9:
77752454-77752532
79
OSTF1_HUMAN
137-163
27
2
A:137-163
B:137-163
27
27
1.9
ENST00000346234
9
ENSE00000803854
chr9:
77755750-77755848
99
OSTF1_HUMAN
163-196
34
2
A:163-193
B:163-192
31
30
1.10
ENST00000346234
10
ENSE00001198580
chr9:
77761599-77762181
583
OSTF1_HUMAN
196-214
19
0
-
-
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3ehqA02 (A:75-193)
1b: CATH_3ehqB02 (B:75-192)
2a: CATH_3ehqA01 (A:12-74)
2b: CATH_3ehqB01 (B:12-74)
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(
)
Organisms
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)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.20, no name defined]
(65)
Human (Homo sapiens)
(31)
1a
3ehqA02
A:75-193
1b
3ehqB02
B:75-192
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
SH3 Domains
(267)
Human (Homo sapiens)
(133)
2a
3ehqA01
A:12-74
2b
3ehqB01
B:12-74
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Pfam Domains
(0, 0)
Info
all PFAM domains
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