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3EF2
Asym. Unit
Info
Asym.Unit (233 KB)
Biol.Unit 1 (115 KB)
Biol.Unit 2 (115 KB)
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(1)
Title
:
STRUCTURE OF THE MARASMIUS OREADES MUSHROOM LECTIN (MOA) IN COMPLEX WITH GALALPHA(1,3)[FUCALPHA(1,2)]GAL AND CALCIUM.
Authors
:
E. M. Grahn, I. J. Goldstein, U. Krengel
Date
:
08 Sep 08 (Deposition) - 30 Jun 09 (Release) - 30 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Lectin, Beta-Trefoil, Calcium-Binding, Carbohydrate-Binding, Sugar-Binding, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. M. Grahn, H. C. Winter, H. Tateno, I. J. Goldstein, U. Krengel
Structural Characterization Of A Lectin From The Mushroom Marasmius Oreades In Complex With The Blood Group B Trisaccharide And Calcium.
J. Mol. Biol. V. 390 457 2009
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(6, 60)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
2i: CALCIUM ION (CAi)
2j: CALCIUM ION (CAj)
2k: CALCIUM ION (CAk)
2l: CALCIUM ION (CAl)
2m: CALCIUM ION (CAm)
2n: CALCIUM ION (CAn)
2o: CALCIUM ION (CAo)
2p: CALCIUM ION (CAp)
3a: ALPHA-L-FUCOSE (FUCa)
3b: ALPHA-L-FUCOSE (FUCb)
3c: ALPHA-L-FUCOSE (FUCc)
3d: ALPHA-L-FUCOSE (FUCd)
3e: ALPHA-L-FUCOSE (FUCe)
3f: ALPHA-L-FUCOSE (FUCf)
3g: ALPHA-L-FUCOSE (FUCg)
3h: ALPHA-L-FUCOSE (FUCh)
3i: ALPHA-L-FUCOSE (FUCi)
3j: ALPHA-L-FUCOSE (FUCj)
3k: ALPHA-L-FUCOSE (FUCk)
3l: ALPHA-L-FUCOSE (FUCl)
4a: BETA-D-GALACTOSE (GALa)
4b: BETA-D-GALACTOSE (GALb)
4c: BETA-D-GALACTOSE (GALc)
4d: BETA-D-GALACTOSE (GALd)
4e: BETA-D-GALACTOSE (GALe)
4f: BETA-D-GALACTOSE (GALf)
4g: BETA-D-GALACTOSE (GALg)
4h: BETA-D-GALACTOSE (GALh)
5a: ALPHA D-GALACTOSE (GLAa)
5b: ALPHA D-GALACTOSE (GLAb)
5c: ALPHA D-GALACTOSE (GLAc)
5d: ALPHA D-GALACTOSE (GLAd)
5e: ALPHA D-GALACTOSE (GLAe)
5f: ALPHA D-GALACTOSE (GLAf)
5g: ALPHA D-GALACTOSE (GLAg)
5h: ALPHA D-GALACTOSE (GLAh)
5i: ALPHA D-GALACTOSE (GLAi)
5j: ALPHA D-GALACTOSE (GLAj)
5k: ALPHA D-GALACTOSE (GLAk)
5l: ALPHA D-GALACTOSE (GLAl)
5m: ALPHA D-GALACTOSE (GLAm)
5n: ALPHA D-GALACTOSE (GLAn)
5o: ALPHA D-GALACTOSE (GLAo)
5p: ALPHA D-GALACTOSE (GLAp)
6a: CYSTEINESULFONIC ACID (OCSa)
6b: CYSTEINESULFONIC ACID (OCSb)
6c: CYSTEINESULFONIC ACID (OCSc)
6d: CYSTEINESULFONIC ACID (OCSd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
CA
16
Ligand/Ion
CALCIUM ION
3
FUC
12
Ligand/Ion
ALPHA-L-FUCOSE
4
GAL
8
Ligand/Ion
BETA-D-GALACTOSE
5
GLA
16
Ligand/Ion
ALPHA D-GALACTOSE
6
OCS
4
Mod. Amino Acid
CYSTEINESULFONIC ACID
[
close Hetero Component info
]
Sites
(56, 56)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:23 , GAL A:295 , HOH A:321 , HOH A:355 , HOH A:390 , HOH A:502
BINDING SITE FOR RESIDUE FUC A 294
02
AC2
SOFTWARE
ASP A:20 , LEU A:21 , LYS A:22 , ASP A:23 , TRP A:35 , HIS A:45 , FUC A:294 , GLA A:296 , HOH A:321 , HOH A:334
BINDING SITE FOR RESIDUE GAL A 295
03
AC3
SOFTWARE
LYS A:22 , TRP A:35 , GLN A:36 , PHE A:37 , THR A:38 , ASN A:43 , GAL A:295 , HOH A:312 , HOH A:313 , HOH A:334 , HOH A:355 , HOH A:457
BINDING SITE FOR RESIDUE GLA A 296
04
AC4
SOFTWARE
GAL A:298 , GLA A:299 , HOH A:443 , HOH A:542
BINDING SITE FOR RESIDUE FUC A 297
05
AC5
SOFTWARE
ASP A:72 , LEU A:73 , TYR A:74 , ASN A:75 , TRP A:87 , ASN A:95 , HIS A:97 , FUC A:297 , GLA A:299
BINDING SITE FOR RESIDUE GAL A 298
06
AC6
SOFTWARE
TRP A:87 , GLN A:88 , ASN A:95 , FUC A:297 , GAL A:298 , HOH A:361 , HOH A:488 , HOH A:492 , HOH A:511 , HOH A:541 , HOH A:543
BINDING SITE FOR RESIDUE GLA A 299
07
AC7
SOFTWARE
GLA A:301 , HOH A:410 , HOH A:474 , HOH A:501 , HOH A:525 , HOH B:648
BINDING SITE FOR RESIDUE FUC A 300
08
AC8
SOFTWARE
ASP A:123 , LEU A:124 , VAL A:125 , ASN A:126 , TRP A:138 , ASN A:146 , HIS A:148 , FUC A:300 , GLA A:302 , HOH A:332
BINDING SITE FOR RESIDUE GLA A 301
09
AC9
SOFTWARE
TRP A:138 , THR A:139 , GLU A:144 , ASN A:146 , GLA A:301 , HOH A:332 , HOH A:337 , HOH A:410 , HOH A:459 , HOH A:478 , HOH A:507 , ALA B:80
BINDING SITE FOR RESIDUE GLA A 302
10
BC1
SOFTWARE
GLN A:211 , ASP A:214 , ASP A:216 , ASP A:217 , HOH A:323 , ASP B:183
BINDING SITE FOR RESIDUE CA A 303
11
BC2
SOFTWARE
ASP A:214 , ASP A:216 , HOH A:539 , LEU B:182 , ASP B:183 , HOH B:651
BINDING SITE FOR RESIDUE CA A 304
12
BC3
SOFTWARE
LEU A:182 , ASP A:183 , HOH A:426 , ASP B:214 , ASP B:216 , HOH B:722
BINDING SITE FOR RESIDUE CA A 305
13
BC4
SOFTWARE
ASP A:216 , HIS A:257 , ALA A:258 , TYR A:289 , HOH A:539 , ILE B:181
BINDING SITE FOR RESIDUE ACT A 306
14
BC5
SOFTWARE
SER A:201
BINDING SITE FOR RESIDUE CA A 307
15
BC6
SOFTWARE
VAL A:15
BINDING SITE FOR RESIDUE CA A 308
16
BC7
SOFTWARE
ILE A:181 , HOH A:637 , ASP B:216 , HIS B:257 , ALA B:258 , TYR B:289 , HOH B:722
BINDING SITE FOR RESIDUE ACT A 309
17
BC8
SOFTWARE
ASP B:23 , GAL B:295 , HOH B:530 , HOH B:549 , HOH B:574 , HOH B:673
BINDING SITE FOR RESIDUE FUC B 294
18
BC9
SOFTWARE
ASP B:20 , LEU B:21 , LYS B:22 , ASP B:23 , TRP B:35 , HIS B:45 , FUC B:294 , GLA B:296 , HOH B:528 , HOH B:530
BINDING SITE FOR RESIDUE GAL B 295
19
CC1
SOFTWARE
LYS B:22 , TRP B:35 , GLN B:36 , PHE B:37 , THR B:38 , ASN B:43 , GAL B:295 , HOH B:506 , HOH B:511 , HOH B:528 , HOH B:549 , HOH B:616
BINDING SITE FOR RESIDUE GLA B 296
20
CC2
SOFTWARE
GAL B:298 , GLA B:299 , HOH B:636 , HOH B:707
BINDING SITE FOR RESIDUE FUC B 297
21
CC3
SOFTWARE
ASP B:72 , LEU B:73 , TYR B:74 , ASN B:75 , TRP B:87 , ASN B:95 , HIS B:97 , FUC B:297 , GLA B:299 , HOH B:739
BINDING SITE FOR RESIDUE GAL B 298
22
CC4
SOFTWARE
TRP B:87 , GLN B:88 , ASN B:95 , FUC B:297 , GAL B:298 , HOH B:519 , HOH B:663 , HOH B:679 , HOH B:697 , HOH B:732 , HOH B:774
BINDING SITE FOR RESIDUE GLA B 299
23
CC5
SOFTWARE
HOH A:453 , GLA B:301 , HOH B:591 , HOH B:625 , HOH B:649 , HOH B:729
BINDING SITE FOR RESIDUE FUC B 300
24
CC6
SOFTWARE
ASP B:123 , LEU B:124 , VAL B:125 , ASN B:126 , TRP B:138 , ASN B:146 , HIS B:148 , FUC B:300 , GLA B:302 , HOH B:529 , HOH B:798 , HOH B:799
BINDING SITE FOR RESIDUE GLA B 301
25
CC7
SOFTWARE
GLU A:79 , ALA A:80 , HOH A:337 , TRP B:138 , THR B:139 , GLU B:144 , ASN B:146 , GLA B:301 , HOH B:529 , HOH B:726 , HOH B:727 , HOH B:728
BINDING SITE FOR RESIDUE GLA B 302
26
CC8
SOFTWARE
ASP A:183 , GLN B:211 , ASP B:214 , ASP B:216 , ASP B:217 , HOH B:525
BINDING SITE FOR RESIDUE CA B 303
27
CC9
SOFTWARE
SER B:201
BINDING SITE FOR RESIDUE CA B 305
28
DC1
SOFTWARE
VAL B:15 , PRO B:16
BINDING SITE FOR RESIDUE CA B 306
29
DC2
SOFTWARE
ASP C:23 , GAL C:295 , HOH C:587 , HOH C:635 , HOH C:651 , HOH C:772
BINDING SITE FOR RESIDUE FUC C 294
30
DC3
SOFTWARE
ASP C:20 , LEU C:21 , LYS C:22 , ASP C:23 , TRP C:35 , HIS C:45 , FUC C:294 , GLA C:296 , HOH C:587 , HOH C:601
BINDING SITE FOR RESIDUE GAL C 295
31
DC4
SOFTWARE
LYS C:22 , TRP C:35 , GLN C:36 , PHE C:37 , THR C:38 , ASN C:43 , GAL C:295 , HOH C:579 , HOH C:584 , HOH C:601 , HOH C:635 , HOH C:693
BINDING SITE FOR RESIDUE GLA C 296
32
DC5
SOFTWARE
GAL C:298 , GLA C:299 , HOH C:680 , HOH C:785
BINDING SITE FOR RESIDUE FUC C 297
33
DC6
SOFTWARE
ASP C:72 , LEU C:73 , TYR C:74 , ASN C:75 , TRP C:87 , ASN C:95 , HIS C:97 , FUC C:297 , GLA C:299 , HOH C:875
BINDING SITE FOR RESIDUE GAL C 298
34
DC7
SOFTWARE
TRP C:87 , GLN C:88 , ASN C:95 , FUC C:297 , GAL C:298 , HOH C:588 , HOH C:728 , HOH C:746 , HOH C:786 , HOH C:804 , HOH C:861
BINDING SITE FOR RESIDUE GLA C 299
35
DC8
SOFTWARE
GLA C:301 , HOH C:677 , HOH C:735 , HOH C:779 , HOH C:836 , HOH D:472 , HOH D:568
BINDING SITE FOR RESIDUE FUC C 300
36
DC9
SOFTWARE
ASP C:123 , LEU C:124 , VAL C:125 , ASN C:126 , TRP C:138 , ASN C:146 , HIS C:148 , FUC C:300 , GLA C:302 , HOH C:607 , HOH C:871
BINDING SITE FOR RESIDUE GLA C 301
37
EC1
SOFTWARE
TRP C:138 , THR C:139 , GLU C:144 , ASN C:146 , GLA C:301 , HOH C:607 , HOH C:805 , HOH C:839 , ALA D:80 , HOH D:330 , HOH D:546
BINDING SITE FOR RESIDUE GLA C 302
38
EC2
SOFTWARE
ASP C:214 , ASP C:216 , HOH C:794 , HOH C:889 , LEU D:182 , ASP D:183
BINDING SITE FOR RESIDUE CA C 303
39
EC3
SOFTWARE
GLN C:211 , ASP C:214 , ASP C:216 , ASP C:217 , HOH C:600 , ASP D:183
BINDING SITE FOR RESIDUE CA C 304
40
EC4
SOFTWARE
LEU C:182 , ASP C:183 , HOH C:733 , ASP D:214 , ASP D:216 , HOH D:530
BINDING SITE FOR RESIDUE CA C 305
41
EC5
SOFTWARE
ASP C:216 , HIS C:257 , ALA C:258 , TYR C:289 , HOH C:794 , ILE D:181
BINDING SITE FOR RESIDUE ACT C 306
42
EC6
SOFTWARE
SER C:201
BINDING SITE FOR RESIDUE CA C 307
43
EC7
SOFTWARE
VAL C:15
BINDING SITE FOR RESIDUE CA C 308
44
EC8
SOFTWARE
ASP D:23 , GAL D:295 , HOH D:315 , HOH D:366 , HOH D:377 , HOH D:466
BINDING SITE FOR RESIDUE FUC D 294
45
EC9
SOFTWARE
ASP D:20 , LEU D:21 , LYS D:22 , ASP D:23 , TRP D:35 , HIS D:45 , FUC D:294 , GLA D:296 , HOH D:315 , HOH D:333
BINDING SITE FOR RESIDUE GAL D 295
46
FC1
SOFTWARE
LYS D:22 , TRP D:35 , GLN D:36 , PHE D:37 , THR D:38 , ASN D:43 , GAL D:295 , HOH D:308 , HOH D:314 , HOH D:333 , HOH D:366 , HOH D:422
BINDING SITE FOR RESIDUE GLA D 296
47
FC2
SOFTWARE
GAL D:298 , GLA D:299 , HOH D:431 , HOH D:548
BINDING SITE FOR RESIDUE FUC D 297
48
FC3
SOFTWARE
ASP D:72 , LEU D:73 , TYR D:74 , ASN D:75 , TRP D:87 , ASN D:95 , HIS D:97 , FUC D:297 , GLA D:299 , HOH D:549
BINDING SITE FOR RESIDUE GAL D 298
49
FC4
SOFTWARE
TRP D:87 , GLN D:88 , ASN D:95 , FUC D:297 , GAL D:298 , HOH D:349 , HOH D:428 , HOH D:471 , HOH D:488 , HOH D:495 , HOH D:532
BINDING SITE FOR RESIDUE GLA D 299
50
FC5
SOFTWARE
HOH C:719 , GLA D:301 , HOH D:394 , HOH D:413 , HOH D:475 , HOH D:504 , HOH D:569
BINDING SITE FOR RESIDUE FUC D 300
51
FC6
SOFTWARE
ASP D:123 , LEU D:124 , VAL D:125 , ASN D:126 , TRP D:138 , ASN D:146 , HIS D:148 , FUC D:300 , GLA D:302 , HOH D:332 , HOH D:606
BINDING SITE FOR RESIDUE GLA D 301
52
FC7
SOFTWARE
ALA C:80 , TRP D:138 , THR D:139 , GLU D:144 , ASN D:146 , GLA D:301 , HOH D:330 , HOH D:332 , HOH D:541 , HOH D:542 , HOH D:547
BINDING SITE FOR RESIDUE GLA D 302
53
FC8
SOFTWARE
ASP C:183 , GLN D:211 , ASP D:214 , ASP D:216 , ASP D:217 , HOH D:337
BINDING SITE FOR RESIDUE CA D 303
54
FC9
SOFTWARE
ASP D:216 , HIS D:257 , ALA D:258 , HOH D:530 , HOH D:607
BINDING SITE FOR RESIDUE ACT D 304
55
GC1
SOFTWARE
SER D:201
BINDING SITE FOR RESIDUE CA D 305
56
GC2
SOFTWARE
VAL D:15 , PRO D:16
BINDING SITE FOR RESIDUE CA D 306
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d3ef2a1 (A:2-155)
1b: SCOP_d3ef2b1 (B:2-155)
1c: SCOP_d3ef2c1 (C:2-155)
1d: SCOP_d3ef2d1 (D:2-155)
2a: SCOP_d3ef2a2 (A:156-293)
2b: SCOP_d3ef2b2 (B:156-293)
2c: SCOP_d3ef2c2 (C:156-293)
2d: SCOP_d3ef2d2 (D:156-293)
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Protein Domains
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(
)
Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Trefoil
(385)
Superfamily
:
Ricin B-like lectins
(91)
Family
:
Ricin B-like
(65)
Protein domain
:
Agglutinin MOA, N-terminal domain
(2)
Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]
(2)
1a
d3ef2a1
A:2-155
1b
d3ef2b1
B:2-155
1c
d3ef2c1
C:2-155
1d
d3ef2d1
D:2-155
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cysteine proteinases
(392)
Superfamily
:
Cysteine proteinases
(392)
Family
:
MOA C-terminal domain-like
(2)
Protein domain
:
Agglutinin MOA
(2)
Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]
(2)
2a
d3ef2a2
A:156-293
2b
d3ef2b2
B:156-293
2c
d3ef2c2
C:156-293
2d
d3ef2d2
D:156-293
[
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CATH Domains
(0, 0)
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (233 KB)
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3EF2
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