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3E6Q
Asym. Unit
Info
Asym.Unit (313 KB)
Biol.Unit 1 (79 KB)
Biol.Unit 2 (77 KB)
Biol.Unit 3 (77 KB)
Biol.Unit 4 (78 KB)
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(1)
Title
:
PUTATIVE 5-CARBOXYMETHYL-2-HYDROXYMUCONATE ISOMERASE FROM PSEUDOMONAS AERUGINOSA.
Authors
:
J. Osipiuk, X. Xu, H. Cui, A. Savchenko, A. M. Edwards, A. Joachimiak, Mi Center For Structural Genomics (Mcsg)
Date
:
15 Aug 08 (Deposition) - 26 Aug 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Biol. Unit 4: J,K,L (1x)
Keywords
:
Structural Genomics, Apc7683, Isomerase, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Osipiuk, X. Xu, H. Cui, A. Savchenko, A. M. Edwards, A. Joachimiak
X-Ray Crystal Structure Of Putative 5-Carboxymethyl-2-Hydroxymuconate Isomerase From Pseudomona Aeruginosa.
To Be Published
[
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Hetero Components
(7, 71)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
3a: FORMIC ACID (FMTa)
3b: FORMIC ACID (FMTb)
3c: FORMIC ACID (FMTc)
3d: FORMIC ACID (FMTd)
3e: FORMIC ACID (FMTe)
3f: FORMIC ACID (FMTf)
3g: FORMIC ACID (FMTg)
3h: FORMIC ACID (FMTh)
3i: FORMIC ACID (FMTi)
3j: FORMIC ACID (FMTj)
3k: FORMIC ACID (FMTk)
3l: FORMIC ACID (FMTl)
3m: FORMIC ACID (FMTm)
3n: FORMIC ACID (FMTn)
3o: FORMIC ACID (FMTo)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
5a: IMIDAZOLE (IMDa)
5b: IMIDAZOLE (IMDb)
6a: SELENOMETHIONINE (MSEa)
6b: SELENOMETHIONINE (MSEb)
6c: SELENOMETHIONINE (MSEc)
6d: SELENOMETHIONINE (MSEd)
6e: SELENOMETHIONINE (MSEe)
6f: SELENOMETHIONINE (MSEf)
6g: SELENOMETHIONINE (MSEg)
6h: SELENOMETHIONINE (MSEh)
6i: SELENOMETHIONINE (MSEi)
6j: SELENOMETHIONINE (MSEj)
6k: SELENOMETHIONINE (MSEk)
6l: SELENOMETHIONINE (MSEl)
6m: SELENOMETHIONINE (MSEm)
6n: SELENOMETHIONINE (MSEn)
6o: SELENOMETHIONINE (MSEo)
6p: SELENOMETHIONINE (MSEp)
6q: SELENOMETHIONINE (MSEq)
6r: SELENOMETHIONINE (MSEr)
6s: SELENOMETHIONINE (MSEs)
6t: SELENOMETHIONINE (MSEt)
6u: SELENOMETHIONINE (MSEu)
6v: SELENOMETHIONINE (MSEv)
6w: SELENOMETHIONINE (MSEw)
6x: SELENOMETHIONINE (MSEx)
7a: SODIUM ION (NAa)
7b: SODIUM ION (NAb)
7c: SODIUM ION (NAc)
7d: SODIUM ION (NAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
EDO
17
Ligand/Ion
1,2-ETHANEDIOL
3
FMT
15
Ligand/Ion
FORMIC ACID
4
GOL
7
Ligand/Ion
GLYCEROL
5
IMD
2
Ligand/Ion
IMIDAZOLE
6
MSE
24
Mod. Amino Acid
SELENOMETHIONINE
7
NA
4
Ligand/Ion
SODIUM ION
[
close Hetero Component info
]
Sites
(47, 47)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:101 , HOH A:389 , VAL B:118 , HOH B:489
BINDING SITE FOR RESIDUE EDO A 310
02
AC2
SOFTWARE
ARG A:51 , HOH A:365 , GLU B:23 , GLU F:48
BINDING SITE FOR RESIDUE FMT A 325
03
AC3
SOFTWARE
ARG A:111 , HOH A:355 , HOH A:375 , HOH A:431
BINDING SITE FOR RESIDUE FMT A 333
04
AC4
SOFTWARE
HIS A:63 , CYS A:65 , GLU A:105 , FMT B:345 , HOH B:477
BINDING SITE FOR RESIDUE FMT A 335
05
AC5
SOFTWARE
ALA A:8 , THR A:9 , ALA A:10 , LEU A:12 , THR A:46 , HOH A:418
BINDING SITE FOR RESIDUE ACT A 337
06
AC6
SOFTWARE
VAL A:5 , GLU A:7 , HIS A:63 , CYS A:65 , HOH B:383
BINDING SITE FOR RESIDUE NA A 343
07
AC7
SOFTWARE
ARG A:107 , ARG B:107 , HOH B:373 , ARG C:107
BINDING SITE FOR RESIDUE GOL B 304
08
AC8
SOFTWARE
GLU A:48 , PHE B:44 , VAL B:45 , THR B:46 , HOH B:361 , HOH B:374 , HOH B:381
BINDING SITE FOR RESIDUE EDO B 309
09
AC9
SOFTWARE
ARG B:111 , HOH B:430 , HOH B:452 , HOH K:464
BINDING SITE FOR RESIDUE FMT B 332
10
BC1
SOFTWARE
GLU B:7 , HOH B:494
BINDING SITE FOR RESIDUE NA B 344
11
BC2
SOFTWARE
FMT A:335 , HIS B:3 , VAL B:5 , SER B:67 , HOH B:346 , HOH B:402 , HOH B:477
BINDING SITE FOR RESIDUE FMT B 345
12
BC3
SOFTWARE
ARG A:107 , GLU A:108 , HOH A:405 , ARG B:107 , GLU B:108 , HOH B:470 , ARG C:107 , GLU C:108 , HOH C:327 , HOH C:336 , HOH C:342 , HOH C:429 , HOH C:457
BINDING SITE FOR RESIDUE GOL C 303
13
BC4
SOFTWARE
HIS A:3 , SER A:67 , HOH A:345 , HIS C:63 , CYS C:65 , GLU C:105 , HOH C:358
BINDING SITE FOR RESIDUE EDO C 318
14
BC5
SOFTWARE
HIS D:63 , CYS D:65 , GLU D:105 , HOH D:344 , HIS E:3 , ARG E:107 , HOH E:418
BINDING SITE FOR RESIDUE EDO D 313
15
BC6
SOFTWARE
ARG D:107 , GLU D:108 , ARG E:107 , GLU E:108 , HOH E:421 , HOH E:422 , HOH E:437 , HOH E:497 , HOH E:541 , ARG F:107 , GLU F:108
BINDING SITE FOR RESIDUE GOL E 301
16
BC7
SOFTWARE
GLU A:48 , HOH A:415 , GLU E:48 , ALA E:49 , TYR E:50 , ARG E:51 , HOH E:427 , HOH E:534
BINDING SITE FOR RESIDUE GOL E 306
17
BC8
SOFTWARE
HIS E:63 , CYS E:65 , GLU E:105 , HOH E:475 , HIS F:3 , ARG F:43 , SER F:67 , ARG F:107
BINDING SITE FOR RESIDUE EDO E 322
18
BC9
SOFTWARE
ARG D:107 , ARG E:107 , ARG F:107
BINDING SITE FOR RESIDUE ACT E 338
19
CC1
SOFTWARE
HIS D:3 , HOH D:322 , HIS F:63 , CYS F:65 , GLU F:105 , HOH F:498
BINDING SITE FOR RESIDUE EDO F 312
20
CC2
SOFTWARE
THR F:9 , LEU F:12 , HOH F:439
BINDING SITE FOR RESIDUE FMT F 324
21
CC3
SOFTWARE
ASP F:39 , GLN G:34 , HOH G:494
BINDING SITE FOR RESIDUE FMT F 326
22
CC4
SOFTWARE
HOH E:464 , VAL F:5 , GLU F:7 , HIS F:63 , CYS F:65
BINDING SITE FOR RESIDUE NA F 342
23
CC5
SOFTWARE
HIS G:63 , CYS G:65 , GLU G:105 , HOH G:582 , HIS H:3 , HOH H:341
BINDING SITE FOR RESIDUE EDO G 319
24
CC6
SOFTWARE
GLU G:7
BINDING SITE FOR RESIDUE NA G 341
25
CC7
SOFTWARE
ARG G:107 , ARG H:107 , HOH H:406 , HOH H:411 , ARG I:107
BINDING SITE FOR RESIDUE GOL H 302
26
CC8
SOFTWARE
ARG G:107 , ARG H:107 , GLU H:108 , HOH H:357 , HOH H:367 , HOH H:368 , HOH H:473 , ARG I:107 , GLU I:108
BINDING SITE FOR RESIDUE GOL H 305
27
CC9
SOFTWARE
HIS H:63 , CYS H:65 , GLU H:105 , HOH H:382
BINDING SITE FOR RESIDUE EDO H 311
28
DC1
SOFTWARE
TYR H:50 , ARG H:51 , HOH H:342 , HOH H:471 , GLY I:19 , LEU I:22 , HOH I:365
BINDING SITE FOR RESIDUE EDO H 321
29
DC2
SOFTWARE
ARG H:13 , ALA H:93 , HOH H:460 , SER K:17
BINDING SITE FOR RESIDUE FMT H 327
30
DC3
SOFTWARE
HOH H:470
BINDING SITE FOR RESIDUE FMT H 328
31
DC4
SOFTWARE
ALA H:8 , THR H:9 , LEU H:12 , THR H:46 , HOH H:385
BINDING SITE FOR RESIDUE FMT H 334
32
DC5
SOFTWARE
GLU H:48 , PHE I:44 , VAL I:45 , THR I:46 , HOH I:342 , HOH I:391 , HOH I:403
BINDING SITE FOR RESIDUE EDO I 314
33
DC6
SOFTWARE
ARG H:51 , GLU I:20 , GLU I:23 , HOH I:340 , HOH I:365 , HOH I:383 , GLU L:48
BINDING SITE FOR RESIDUE EDO I 315
34
DC7
SOFTWARE
HIS G:3 , ARG G:43 , HIS I:63 , CYS I:65 , GLU I:105 , HOH I:478
BINDING SITE FOR RESIDUE EDO I 317
35
DC8
SOFTWARE
GLU I:7 , HOH I:434
BINDING SITE FOR RESIDUE FMT I 329
36
DC9
SOFTWARE
GLU I:48 , ALA I:49 , TYR I:50 , ARG I:51 , HOH I:400 , HOH I:508
BINDING SITE FOR RESIDUE FMT I 330
37
EC1
SOFTWARE
ARG J:107 , GLU J:108 , HOH J:356 , HOH J:360 , HOH J:374 , HOH J:416 , HOH J:458 , HOH J:478 , ARG K:107 , ARG L:107 , GLU L:108
BINDING SITE FOR RESIDUE GOL J 307
38
EC2
SOFTWARE
HIS J:63 , CYS J:65 , GLU J:105 , HOH J:382 , ARG K:43 , SER K:67
BINDING SITE FOR RESIDUE EDO J 316
39
EC3
SOFTWARE
ARG J:107 , ARG K:107 , ARG L:107
BINDING SITE FOR RESIDUE IMD J 340
40
EC4
SOFTWARE
GLU H:48 , GLU K:48 , ALA K:49 , TYR K:50 , ARG K:51
BINDING SITE FOR RESIDUE EDO K 308
41
EC5
SOFTWARE
GLU K:7 , HIS K:63 , CYS K:65 , GLU K:105 , EDO K:324 , HOH K:454 , HOH K:485 , VAL L:5 , HOH L:394
BINDING SITE FOR RESIDUE EDO K 323
42
EC6
SOFTWARE
HIS K:63 , CYS K:65 , GLU K:105 , EDO K:323 , HIS L:3 , SER L:67 , ARG L:107 , MSE L:109
BINDING SITE FOR RESIDUE EDO K 324
43
EC7
SOFTWARE
GLN A:34 , HOH A:373 , PHE L:-2 , GLY L:36 , ASP L:39
BINDING SITE FOR RESIDUE EDO L 320
44
EC8
SOFTWARE
LEU L:-4
BINDING SITE FOR RESIDUE FMT L 331
45
EC9
SOFTWARE
ASP L:73 , FMT L:340 , HOH L:502 , HOH L:510
BINDING SITE FOR RESIDUE FMT L 336
46
FC1
SOFTWARE
SER I:17 , ALA L:8 , THR L:9 , ALA L:10 , LEU L:12 , LEU L:14 , PHE L:44 , THR L:46 , HOH L:448
BINDING SITE FOR RESIDUE IMD L 339
47
FC2
SOFTWARE
ARG L:72 , ASP L:73 , THR L:76 , FMT L:336
BINDING SITE FOR RESIDUE FMT L 340
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
[
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_3e6qA00 (A:-4-121)
1b: CATH_3e6qB00 (B:-4-121)
1c: CATH_3e6qD00 (D:-5-122)
1d: CATH_3e6qF00 (F:-6-121)
1e: CATH_3e6qC00 (C:-4-121)
1f: CATH_3e6qG00 (G:-4-121)
1g: CATH_3e6qH00 (H:-4-121)
1h: CATH_3e6qI00 (I:-4-121)
1i: CATH_3e6qE00 (E:-5-121)
1j: CATH_3e6qJ00 (J:-5-121)
1k: CATH_3e6qK00 (K:-5-121)
1l: CATH_3e6qL00 (L:-5-121)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Macrophage Migration Inhibitory Factor
(40)
Homologous Superfamily
:
Macrophage Migration Inhibitory Factor
(40)
Pseudomonas aeruginosa. Organism_taxid: 287. Strain: pao1.
(1)
1a
3e6qA00
A:-4-121
1b
3e6qB00
B:-4-121
1c
3e6qD00
D:-5-122
1d
3e6qF00
F:-6-121
1e
3e6qC00
C:-4-121
1f
3e6qG00
G:-4-121
1g
3e6qH00
H:-4-121
1h
3e6qI00
I:-4-121
1i
3e6qE00
E:-5-121
1j
3e6qJ00
J:-5-121
1k
3e6qK00
K:-5-121
1l
3e6qL00
L:-5-121
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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