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3E6Q
Biol. Unit 3
Info
Asym.Unit (313 KB)
Biol.Unit 1 (79 KB)
Biol.Unit 2 (77 KB)
Biol.Unit 3 (77 KB)
Biol.Unit 4 (78 KB)
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(1)
Title
:
PUTATIVE 5-CARBOXYMETHYL-2-HYDROXYMUCONATE ISOMERASE FROM PSEUDOMONAS AERUGINOSA.
Authors
:
J. Osipiuk, X. Xu, H. Cui, A. Savchenko, A. M. Edwards, A. Joachimiak, Mi Center For Structural Genomics (Mcsg)
Date
:
15 Aug 08 (Deposition) - 26 Aug 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Biol. Unit 4: J,K,L (1x)
Keywords
:
Structural Genomics, Apc7683, Isomerase, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Osipiuk, X. Xu, H. Cui, A. Savchenko, A. M. Edwards, A. Joachimiak
X-Ray Crystal Structure Of Putative 5-Carboxymethyl-2-Hydroxymuconate Isomerase From Pseudomona Aeruginosa.
To Be Published
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Hetero Components
(4, 19)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
3a: FORMIC ACID (FMTa)
3b: FORMIC ACID (FMTb)
3c: FORMIC ACID (FMTc)
3d: FORMIC ACID (FMTd)
3e: FORMIC ACID (FMTe)
3f: FORMIC ACID (FMTf)
3g: FORMIC ACID (FMTg)
3h: FORMIC ACID (FMTh)
3i: FORMIC ACID (FMTi)
3j: FORMIC ACID (FMTj)
3k: FORMIC ACID (FMTk)
3l: FORMIC ACID (FMTl)
3m: FORMIC ACID (FMTm)
3n: FORMIC ACID (FMTn)
3o: FORMIC ACID (FMTo)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
5a: IMIDAZOLE (IMDa)
5b: IMIDAZOLE (IMDb)
6a: SELENOMETHIONINE (MSEa)
6b: SELENOMETHIONINE (MSEb)
6c: SELENOMETHIONINE (MSEc)
6d: SELENOMETHIONINE (MSEd)
6e: SELENOMETHIONINE (MSEe)
6f: SELENOMETHIONINE (MSEf)
6g: SELENOMETHIONINE (MSEg)
6h: SELENOMETHIONINE (MSEh)
6i: SELENOMETHIONINE (MSEi)
6j: SELENOMETHIONINE (MSEj)
6k: SELENOMETHIONINE (MSEk)
6l: SELENOMETHIONINE (MSEl)
6m: SELENOMETHIONINE (MSEm)
6n: SELENOMETHIONINE (MSEn)
6o: SELENOMETHIONINE (MSEo)
6p: SELENOMETHIONINE (MSEp)
6q: SELENOMETHIONINE (MSEq)
6r: SELENOMETHIONINE (MSEr)
6s: SELENOMETHIONINE (MSEs)
6t: SELENOMETHIONINE (MSEt)
6u: SELENOMETHIONINE (MSEu)
6v: SELENOMETHIONINE (MSEv)
6w: SELENOMETHIONINE (MSEw)
6x: SELENOMETHIONINE (MSEx)
7a: SODIUM ION (NAa)
7b: SODIUM ION (NAb)
7c: SODIUM ION (NAc)
7d: SODIUM ION (NAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
-1
Ligand/Ion
ACETATE ION
2
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
3
FMT
5
Ligand/Ion
FORMIC ACID
4
GOL
2
Ligand/Ion
GLYCEROL
5
IMD
-1
Ligand/Ion
IMIDAZOLE
6
MSE
6
Mod. Amino Acid
SELENOMETHIONINE
7
NA
-1
Ligand/Ion
SODIUM ION
[
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]
Sites
(17, 17)
Info
All Sites
01: CC3 (SOFTWARE)
02: CC5 (SOFTWARE)
03: CC6 (SOFTWARE)
04: CC7 (SOFTWARE)
05: CC8 (SOFTWARE)
06: CC9 (SOFTWARE)
07: DC1 (SOFTWARE)
08: DC2 (SOFTWARE)
09: DC3 (SOFTWARE)
10: DC4 (SOFTWARE)
11: DC5 (SOFTWARE)
12: DC6 (SOFTWARE)
13: DC7 (SOFTWARE)
14: DC8 (SOFTWARE)
15: DC9 (SOFTWARE)
16: EC4 (SOFTWARE)
17: FC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
CC3
SOFTWARE
ASP F:39 , GLN G:34 , HOH G:494
BINDING SITE FOR RESIDUE FMT F 326
02
CC5
SOFTWARE
HIS G:63 , CYS G:65 , GLU G:105 , HOH G:582 , HIS H:3 , HOH H:341
BINDING SITE FOR RESIDUE EDO G 319
03
CC6
SOFTWARE
GLU G:7
BINDING SITE FOR RESIDUE NA G 341
04
CC7
SOFTWARE
ARG G:107 , ARG H:107 , HOH H:406 , HOH H:411 , ARG I:107
BINDING SITE FOR RESIDUE GOL H 302
05
CC8
SOFTWARE
ARG G:107 , ARG H:107 , GLU H:108 , HOH H:357 , HOH H:367 , HOH H:368 , HOH H:473 , ARG I:107 , GLU I:108
BINDING SITE FOR RESIDUE GOL H 305
06
CC9
SOFTWARE
HIS H:63 , CYS H:65 , GLU H:105 , HOH H:382
BINDING SITE FOR RESIDUE EDO H 311
07
DC1
SOFTWARE
TYR H:50 , ARG H:51 , HOH H:342 , HOH H:471 , GLY I:19 , LEU I:22 , HOH I:365
BINDING SITE FOR RESIDUE EDO H 321
08
DC2
SOFTWARE
ARG H:13 , ALA H:93 , HOH H:460 , SER K:17
BINDING SITE FOR RESIDUE FMT H 327
09
DC3
SOFTWARE
HOH H:470
BINDING SITE FOR RESIDUE FMT H 328
10
DC4
SOFTWARE
ALA H:8 , THR H:9 , LEU H:12 , THR H:46 , HOH H:385
BINDING SITE FOR RESIDUE FMT H 334
11
DC5
SOFTWARE
GLU H:48 , PHE I:44 , VAL I:45 , THR I:46 , HOH I:342 , HOH I:391 , HOH I:403
BINDING SITE FOR RESIDUE EDO I 314
12
DC6
SOFTWARE
ARG H:51 , GLU I:20 , GLU I:23 , HOH I:340 , HOH I:365 , HOH I:383 , GLU L:48
BINDING SITE FOR RESIDUE EDO I 315
13
DC7
SOFTWARE
HIS G:3 , ARG G:43 , HIS I:63 , CYS I:65 , GLU I:105 , HOH I:478
BINDING SITE FOR RESIDUE EDO I 317
14
DC8
SOFTWARE
GLU I:7 , HOH I:434
BINDING SITE FOR RESIDUE FMT I 329
15
DC9
SOFTWARE
GLU I:48 , ALA I:49 , TYR I:50 , ARG I:51 , HOH I:400 , HOH I:508
BINDING SITE FOR RESIDUE FMT I 330
16
EC4
SOFTWARE
GLU H:48 , GLU K:48 , ALA K:49 , TYR K:50 , ARG K:51
BINDING SITE FOR RESIDUE EDO K 308
17
FC1
SOFTWARE
SER I:17 , ALA L:8 , THR L:9 , ALA L:10 , LEU L:12 , LEU L:14 , PHE L:44 , THR L:46 , HOH L:448
BINDING SITE FOR RESIDUE IMD L 339
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
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Sorry, no Info available
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_3e6qA00 (A:-4-121)
1b: CATH_3e6qB00 (B:-4-121)
1c: CATH_3e6qD00 (D:-5-122)
1d: CATH_3e6qF00 (F:-6-121)
1e: CATH_3e6qC00 (C:-4-121)
1f: CATH_3e6qG00 (G:-4-121)
1g: CATH_3e6qH00 (H:-4-121)
1h: CATH_3e6qI00 (I:-4-121)
1i: CATH_3e6qE00 (E:-5-121)
1j: CATH_3e6qJ00 (J:-5-121)
1k: CATH_3e6qK00 (K:-5-121)
1l: CATH_3e6qL00 (L:-5-121)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Macrophage Migration Inhibitory Factor
(40)
Homologous Superfamily
:
Macrophage Migration Inhibitory Factor
(40)
Pseudomonas aeruginosa. Organism_taxid: 287. Strain: pao1.
(1)
1a
3e6qA00
A:-4-121
1b
3e6qB00
B:-4-121
1c
3e6qD00
D:-5-122
1d
3e6qF00
F:-6-121
1e
3e6qC00
C:-4-121
1f
3e6qG00
G:-4-121
1g
3e6qH00
H:-4-121
1h
3e6qI00
I:-4-121
1i
3e6qE00
E:-5-121
1j
3e6qJ00
J:-5-121
1k
3e6qK00
K:-5-121
1l
3e6qL00
L:-5-121
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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