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3E2P
Biol. Unit 5
Info
Asym.Unit (568 KB)
Biol.Unit 1 (147 KB)
Biol.Unit 2 (147 KB)
Biol.Unit 3 (144 KB)
Biol.Unit 4 (145 KB)
Biol.Unit 5 (286 KB)
Biol.Unit 6 (282 KB)
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(1)
Title
:
CATALYTIC SUBUNIT OF M. JANNASCHII ASPARTATE TRANSCARBAMOYLASE IN AN ORTHORHOMBIC CRYSTAL FORM
Authors
:
J. Vitali, M. J. Colaneri
Date
:
06 Aug 08 (Deposition) - 10 Mar 09 (Release) - 10 Mar 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,I,J,K,L,M,N
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: I,J,K (1x)
Biol. Unit 4: L,M,N (1x)
Biol. Unit 5: A,B,C,D,E,F (1x)
Biol. Unit 6: I,J,K,L,M,N (1x)
Keywords
:
Aspartate Transcarbamoylase, Atcase, Pyrimidine Biosynthesis, Thermostability, Methanococcus Jannaschii, Crystal Structure, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
J. Vitali, M. J. Colaneri
Structure Of The Catalytic Trimer Of Methanococcus Jannaschii Aspartate Transcarbamoylase In An Orthorhombic Crystal Form.
Acta Crystallogr. , Sect. F V. 64 776 2008
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:63 , VAL A:69 , LYS B:63 , LYS C:63
BINDING SITE FOR RESIDUE SO4 A 307
2
AC2
SOFTWARE
LYS D:63 , LYS E:63 , VAL E:69 , LYS F:63
BINDING SITE FOR RESIDUE SO4 D 307
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: CARBAMOYLTRANSFERASE (A:47-54,B:47-54,C:47-54,D:47-54,E:...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARBAMOYLTRANSFERASE
PS00097
Aspartate and ornithine carbamoyltransferases signature.
PYRB_METJA
47-54
6
A:47-54
B:47-54
C:47-54
D:47-54
E:47-54
F:47-54
-
-
-
-
-
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 24)
Info
All SCOP Domains
1a: SCOP_d3e2pa1 (A:1-147)
1b: SCOP_d3e2pa2 (A:148-306)
1c: SCOP_d3e2pf1 (F:1-147)
1d: SCOP_d3e2pf2 (F:148-306)
1e: SCOP_d3e2pi1 (I:1-147)
1f: SCOP_d3e2pi2 (I:148-304)
1g: SCOP_d3e2pj1 (J:1-147)
1h: SCOP_d3e2pj2 (J:148-304)
1i: SCOP_d3e2pk1 (K:1-147)
1j: SCOP_d3e2pk2 (K:148-305)
1k: SCOP_d3e2pl1 (L:1-147)
1l: SCOP_d3e2pl2 (L:148-305)
1m: SCOP_d3e2pb1 (B:1-147)
1n: SCOP_d3e2pm1 (M:1-147)
1o: SCOP_d3e2pm2 (M:148-305)
1p: SCOP_d3e2pn1 (N:1-147)
1q: SCOP_d3e2pn2 (N:148-304)
1r: SCOP_d3e2pb2 (B:148-304)
1s: SCOP_d3e2pc1 (C:1-147)
1t: SCOP_d3e2pc2 (C:148-306)
1u: SCOP_d3e2pd1 (D:1-147)
1v: SCOP_d3e2pd2 (D:148-306)
1w: SCOP_d3e2pe1 (E:1-147)
1x: SCOP_d3e2pe2 (E:148-306)
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(
)
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)
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)
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)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ATC-like
(129)
Superfamily
:
Aspartate/ornithine carbamoyltransferase
(122)
Family
:
automated matches
(35)
Protein domain
:
automated matches
(35)
Methanocaldococcus jannaschii [TaxId: 2190]
(1)
1a
d3e2pa1
A:1-147
1b
d3e2pa2
A:148-306
1c
d3e2pf1
F:1-147
1d
d3e2pf2
F:148-306
1e
d3e2pi1
I:1-147
1f
d3e2pi2
I:148-304
1g
d3e2pj1
J:1-147
1h
d3e2pj2
J:148-304
1i
d3e2pk1
K:1-147
1j
d3e2pk2
K:148-305
1k
d3e2pl1
L:1-147
1l
d3e2pl2
L:148-305
1m
d3e2pb1
B:1-147
1n
d3e2pm1
M:1-147
1o
d3e2pm2
M:148-305
1p
d3e2pn1
N:1-147
1q
d3e2pn2
N:148-304
1r
d3e2pb2
B:148-304
1s
d3e2pc1
C:1-147
1t
d3e2pc2
C:148-306
1u
d3e2pd1
D:1-147
1v
d3e2pd2
D:148-306
1w
d3e2pe1
E:1-147
1x
d3e2pe2
E:148-306
[
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]
CATH Domains
(1, 24)
Info
all CATH domains
1a: CATH_3e2pA02 (A:131-287)
1b: CATH_3e2pB02 (B:131-287)
1c: CATH_3e2pM02 (M:131-287)
1d: CATH_3e2pN02 (N:131-287)
1e: CATH_3e2pA01 (A:1-130,A:288-306)
1f: CATH_3e2pC01 (C:1-130,C:288-306)
1g: CATH_3e2pD01 (D:1-130,D:288-306)
1h: CATH_3e2pE01 (E:1-130,E:288-306)
1i: CATH_3e2pF01 (F:1-130,F:288-306)
1j: CATH_3e2pK01 (K:1-130,K:288-305)
1k: CATH_3e2pL01 (L:1-130,L:288-305)
1l: CATH_3e2pM01 (M:1-130,M:288-305)
1m: CATH_3e2pC02 (C:131-287)
1n: CATH_3e2pB01 (B:1-130,B:288-304)
1o: CATH_3e2pI01 (I:1-130,I:288-304)
1p: CATH_3e2pJ01 (J:1-130,J:288-304)
1q: CATH_3e2pN01 (N:1-130,N:288-304)
1r: CATH_3e2pD02 (D:131-287)
1s: CATH_3e2pE02 (E:131-287)
1t: CATH_3e2pF02 (F:131-287)
1u: CATH_3e2pI02 (I:131-287)
1v: CATH_3e2pJ02 (J:131-287)
1w: CATH_3e2pK02 (K:131-287)
1x: CATH_3e2pL02 (L:131-287)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1370, no name defined]
(91)
Methanococcus jannaschii (Methanocaldococcus jannaschii)
(1)
1a
3e2pA02
A:131-287
1b
3e2pB02
B:131-287
1c
3e2pM02
M:131-287
1d
3e2pN02
N:131-287
1e
3e2pA01
A:1-130,A:288-306
1f
3e2pC01
C:1-130,C:288-306
1g
3e2pD01
D:1-130,D:288-306
1h
3e2pE01
E:1-130,E:288-306
1i
3e2pF01
F:1-130,F:288-306
1j
3e2pK01
K:1-130,K:288-305
1k
3e2pL01
L:1-130,L:288-305
1l
3e2pM01
M:1-130,M:288-305
1m
3e2pC02
C:131-287
1n
3e2pB01
B:1-130,B:288-304
1o
3e2pI01
I:1-130,I:288-304
1p
3e2pJ01
J:1-130,J:288-304
1q
3e2pN01
N:1-130,N:288-304
1r
3e2pD02
D:131-287
1s
3e2pE02
E:131-287
1t
3e2pF02
F:131-287
1u
3e2pI02
I:131-287
1v
3e2pJ02
J:131-287
1w
3e2pK02
K:131-287
1x
3e2pL02
L:131-287
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Pfam Domains
(0, 0)
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