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3E2P
Asym. Unit
Info
Asym.Unit (568 KB)
Biol.Unit 1 (147 KB)
Biol.Unit 2 (147 KB)
Biol.Unit 3 (144 KB)
Biol.Unit 4 (145 KB)
Biol.Unit 5 (286 KB)
Biol.Unit 6 (282 KB)
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(1)
Title
:
CATALYTIC SUBUNIT OF M. JANNASCHII ASPARTATE TRANSCARBAMOYLASE IN AN ORTHORHOMBIC CRYSTAL FORM
Authors
:
J. Vitali, M. J. Colaneri
Date
:
06 Aug 08 (Deposition) - 10 Mar 09 (Release) - 10 Mar 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,I,J,K,L,M,N
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: I,J,K (1x)
Biol. Unit 4: L,M,N (1x)
Biol. Unit 5: A,B,C,D,E,F (1x)
Biol. Unit 6: I,J,K,L,M,N (1x)
Keywords
:
Aspartate Transcarbamoylase, Atcase, Pyrimidine Biosynthesis, Thermostability, Methanococcus Jannaschii, Crystal Structure, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. Vitali, M. J. Colaneri
Structure Of The Catalytic Trimer Of Methanococcus Jannaschii Aspartate Transcarbamoylase In An Orthorhombic Crystal Form.
Acta Crystallogr. , Sect. F V. 64 776 2008
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:63 , VAL A:69 , LYS B:63 , LYS C:63
BINDING SITE FOR RESIDUE SO4 A 307
2
AC2
SOFTWARE
LYS D:63 , LYS E:63 , VAL E:69 , LYS F:63
BINDING SITE FOR RESIDUE SO4 D 307
3
AC3
SOFTWARE
LYS I:63 , VAL I:69 , LYS J:63 , LYS K:63 , VAL K:69
BINDING SITE FOR RESIDUE SO4 I 307
4
AC4
SOFTWARE
LYS L:63 , VAL L:69 , LYS M:63 , VAL M:69 , LYS N:63
BINDING SITE FOR RESIDUE SO4 L 307
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: CARBAMOYLTRANSFERASE (A:47-54,B:47-54,C:47-54,D:47-54,E:...)
;
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARBAMOYLTRANSFERASE
PS00097
Aspartate and ornithine carbamoyltransferases signature.
PYRB_METJA
47-54
12
A:47-54
B:47-54
C:47-54
D:47-54
E:47-54
F:47-54
I:47-54
J:47-54
K:47-54
L:47-54
M:47-54
N:47-54
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 24)
Info
All SCOP Domains
1a: SCOP_d3e2pa1 (A:1-147)
1b: SCOP_d3e2pa2 (A:148-306)
1c: SCOP_d3e2pf1 (F:1-147)
1d: SCOP_d3e2pf2 (F:148-306)
1e: SCOP_d3e2pi1 (I:1-147)
1f: SCOP_d3e2pi2 (I:148-304)
1g: SCOP_d3e2pj1 (J:1-147)
1h: SCOP_d3e2pj2 (J:148-304)
1i: SCOP_d3e2pk1 (K:1-147)
1j: SCOP_d3e2pk2 (K:148-305)
1k: SCOP_d3e2pl1 (L:1-147)
1l: SCOP_d3e2pl2 (L:148-305)
1m: SCOP_d3e2pb1 (B:1-147)
1n: SCOP_d3e2pm1 (M:1-147)
1o: SCOP_d3e2pm2 (M:148-305)
1p: SCOP_d3e2pn1 (N:1-147)
1q: SCOP_d3e2pn2 (N:148-304)
1r: SCOP_d3e2pb2 (B:148-304)
1s: SCOP_d3e2pc1 (C:1-147)
1t: SCOP_d3e2pc2 (C:148-306)
1u: SCOP_d3e2pd1 (D:1-147)
1v: SCOP_d3e2pd2 (D:148-306)
1w: SCOP_d3e2pe1 (E:1-147)
1x: SCOP_d3e2pe2 (E:148-306)
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)
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)
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)
(
)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ATC-like
(129)
Superfamily
:
Aspartate/ornithine carbamoyltransferase
(122)
Family
:
automated matches
(35)
Protein domain
:
automated matches
(35)
Methanocaldococcus jannaschii [TaxId: 2190]
(1)
1a
d3e2pa1
A:1-147
1b
d3e2pa2
A:148-306
1c
d3e2pf1
F:1-147
1d
d3e2pf2
F:148-306
1e
d3e2pi1
I:1-147
1f
d3e2pi2
I:148-304
1g
d3e2pj1
J:1-147
1h
d3e2pj2
J:148-304
1i
d3e2pk1
K:1-147
1j
d3e2pk2
K:148-305
1k
d3e2pl1
L:1-147
1l
d3e2pl2
L:148-305
1m
d3e2pb1
B:1-147
1n
d3e2pm1
M:1-147
1o
d3e2pm2
M:148-305
1p
d3e2pn1
N:1-147
1q
d3e2pn2
N:148-304
1r
d3e2pb2
B:148-304
1s
d3e2pc1
C:1-147
1t
d3e2pc2
C:148-306
1u
d3e2pd1
D:1-147
1v
d3e2pd2
D:148-306
1w
d3e2pe1
E:1-147
1x
d3e2pe2
E:148-306
[
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CATH Domains
(1, 24)
Info
all CATH domains
1a: CATH_3e2pA02 (A:131-287)
1b: CATH_3e2pB02 (B:131-287)
1c: CATH_3e2pM02 (M:131-287)
1d: CATH_3e2pN02 (N:131-287)
1e: CATH_3e2pA01 (A:1-130,A:288-306)
1f: CATH_3e2pC01 (C:1-130,C:288-306)
1g: CATH_3e2pD01 (D:1-130,D:288-306)
1h: CATH_3e2pE01 (E:1-130,E:288-306)
1i: CATH_3e2pF01 (F:1-130,F:288-306)
1j: CATH_3e2pK01 (K:1-130,K:288-305)
1k: CATH_3e2pL01 (L:1-130,L:288-305)
1l: CATH_3e2pM01 (M:1-130,M:288-305)
1m: CATH_3e2pC02 (C:131-287)
1n: CATH_3e2pB01 (B:1-130,B:288-304)
1o: CATH_3e2pI01 (I:1-130,I:288-304)
1p: CATH_3e2pJ01 (J:1-130,J:288-304)
1q: CATH_3e2pN01 (N:1-130,N:288-304)
1r: CATH_3e2pD02 (D:131-287)
1s: CATH_3e2pE02 (E:131-287)
1t: CATH_3e2pF02 (F:131-287)
1u: CATH_3e2pI02 (I:131-287)
1v: CATH_3e2pJ02 (J:131-287)
1w: CATH_3e2pK02 (K:131-287)
1x: CATH_3e2pL02 (L:131-287)
View:
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)
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)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1370, no name defined]
(91)
Methanococcus jannaschii (Methanocaldococcus jannaschii)
(1)
1a
3e2pA02
A:131-287
1b
3e2pB02
B:131-287
1c
3e2pM02
M:131-287
1d
3e2pN02
N:131-287
1e
3e2pA01
A:1-130,A:288-306
1f
3e2pC01
C:1-130,C:288-306
1g
3e2pD01
D:1-130,D:288-306
1h
3e2pE01
E:1-130,E:288-306
1i
3e2pF01
F:1-130,F:288-306
1j
3e2pK01
K:1-130,K:288-305
1k
3e2pL01
L:1-130,L:288-305
1l
3e2pM01
M:1-130,M:288-305
1m
3e2pC02
C:131-287
1n
3e2pB01
B:1-130,B:288-304
1o
3e2pI01
I:1-130,I:288-304
1p
3e2pJ01
J:1-130,J:288-304
1q
3e2pN01
N:1-130,N:288-304
1r
3e2pD02
D:131-287
1s
3e2pE02
E:131-287
1t
3e2pF02
F:131-287
1u
3e2pI02
I:131-287
1v
3e2pJ02
J:131-287
1w
3e2pK02
K:131-287
1x
3e2pL02
L:131-287
[
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Pfam Domains
(0, 0)
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all PFAM domains
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