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3DI2
Asym. Unit
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Asym.Unit (105 KB)
Biol.Unit 1 (53 KB)
Biol.Unit 2 (50 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX OF HUMAN INTERLEUKIN-7 WITH UNGLYCOSYLATED HUMAN INTERLEUKIN-7 RECEPTOR ALPHA ECTODOMAIN
Authors
:
C. A. Mcelroy, J. A. Dohm, S. T. R. Walsh
Date
:
19 Jun 08 (Deposition) - 27 Jan 09 (Release) - 27 Jan 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Interleukin, Cytokine, Cytokine Receptor, Ectodomain, Glycoprotein, Growth Factor, Secreted, Alternative Splicing, Disease Mutation, Membrane, Phosphoprotein, Polymorphism, Receptor, Scid, Transmembrane, Cytokine/Cytokine Receptor Complex
(Keyword Search:
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)
Reference
:
C. A. Mcelroy, J. A. Dohm, S. T. Walsh
Structural And Biophysical Studies Of The Human Il-7/Il-7Ralpha Complex.
Structure V. 17 54 2009
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
1
Ligand/Ion
PENTAETHYLENE GLYCOL
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:8 , ASN A:91
BINDING SITE FOR RESIDUE 1PE A 340
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SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_021286 (T46I, chain B/D, )
2: VAR_021287 (E93D, chain B/D, )
3: VAR_034870 (P112S, chain B/D, )
4: VAR_021288 (V118V, chain B/D, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_021286
T
66
I
IL7RA_HUMAN
Polymorphism
1494558
B/D
T
46
I
2
UniProt
VAR_021287
E
113
D
IL7RA_HUMAN
Polymorphism
11567735
B/D
E
93
D
3
UniProt
VAR_034870
P
132
S
IL7RA_HUMAN
Unclassified
---
B/D
P
112
S
4
UniProt
VAR_021288
I
138
V
IL7RA_HUMAN
Polymorphism
1494555
B/D
V
118
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: FN3 (B:111-211,D:111-209)
2: INTERLEUKIN_7_9 (A:126-135,C:126-135)
3: HEMATOPO_REC_S_F1 (B:175-206,D:175-206)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FN3
PS50853
Fibronectin type-III domain profile.
IL7RA_HUMAN
131-231
2
B:111-211
D:111-209
2
INTERLEUKIN_7_9
PS00255
Interleukin-7 and -9 signature.
IL7_HUMAN
151-160
2
A:126-135
C:126-135
3
HEMATOPO_REC_S_F1
PS01355
Short hematopoietin receptor family 1 signature.
IL7RA_HUMAN
195-226
2
B:175-206
D:175-206
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Exons
(4, 8)
Info
All Exons
Exon 1.2b (A:8-24 | C:8-24)
Exon 1.4 (A:25-51 | C:25-51)
Exon 1.5a (A:52-91 | C:52-90)
Exon 1.7c (A:122-152 | C:123-149)
View:
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All Exon Boundaries
1: Boundary 1.1a/1.2b
2: Boundary 1.2b/1.4
3: Boundary 1.4/1.5a
4: Boundary 1.5a/1.6
5: Boundary 1.6/1.7c
6: Boundary 1.7c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000263851
1a
ENSE00002161613
chr8:
79717758-79717148
611
IL7_HUMAN
1-4
4
0
-
-
1.2b
ENST00000263851
2b
ENSE00001757516
chr8:
79710443-79710307
137
IL7_HUMAN
4-49
46
2
A:8-24
C:8-24
17
17
1.4
ENST00000263851
4
ENSE00000980755
chr8:
79652317-79652237
81
IL7_HUMAN
50-76
27
2
A:25-51
C:25-51
27
27
1.5a
ENST00000263851
5a
ENSE00000794975
chr8:
79650870-79650739
132
IL7_HUMAN
77-120
44
2
A:52-91
C:52-90
40
39
1.6
ENST00000263851
6
ENSE00000980756
chr8:
79648762-79648709
54
IL7_HUMAN
121-138
18
0
-
-
1.7c
ENST00000263851
7c
ENSE00002096050
chr8:
79646067-79645007
1061
IL7_HUMAN
139-177
39
2
A:122-152
C:123-149
31
27
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3di2B02 (B:109-211)
1b: CATH_3di2D02 (D:109-209)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
3di2B02
B:109-211
1b
3di2D02
D:109-209
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Pfam Domains
(0, 0)
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