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3D5K
Asym. Unit
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Asym.Unit (225 KB)
Biol.Unit 1 (219 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE OPRM CHANNEL IN A NON-SYMMETRICAL SPACE GROUP
Authors
:
G. Phan, I. Broutin, A. Ducruix
Date
:
16 May 08 (Deposition) - 02 Jun 09 (Release) - 18 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Membrane Protein, Channel, Beta-Alpha-Barrel, Antibiotic Resistance, Lipoprotein, Membrane, Outer Membrane, Palmitate, Transmembrane, Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Phan, H. Benabdelhak, M. B. Lascombe, P. Benas, S. Rety, M. Picard, A. Ducruix, C. Etchebest, I. Broutin
Structural And Dynamical Insights Into The Opening Mechanis Of P. Aeruginosa Oprm Channel.
Structure V. 18 507 2010
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
2d: SODIUM ION (NAd)
2e: SODIUM ION (NAe)
2f: SODIUM ION (NAf)
2g: SODIUM ION (NAg)
2h: SODIUM ION (NAh)
2i: SODIUM ION (NAi)
3a: S-ACETYL-CYSTEINE (SCYa)
3b: S-ACETYL-CYSTEINE (SCYb)
3c: S-ACETYL-CYSTEINE (SCYc)
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No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
NA
9
Ligand/Ion
SODIUM ION
3
SCY
3
Mod. Amino Acid
S-ACETYL-CYSTEINE
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:367 , ASP A:371 , GLN C:229
BINDING SITE FOR RESIDUE NA A 475
02
AC2
SOFTWARE
TRP A:40 , GLN A:154 , TRP A:450
BINDING SITE FOR RESIDUE NA A 476
03
AC3
SOFTWARE
ARG B:194 , LEU B:256 , LEU B:257 , ARG B:432
BINDING SITE FOR RESIDUE CL B 475
04
AC4
SOFTWARE
ALA B:228 , ASN B:232 , TYR C:24
BINDING SITE FOR RESIDUE NA B 476
05
AC5
SOFTWARE
ARG B:45 , ASP B:46 , LEU B:256
BINDING SITE FOR RESIDUE NA B 477
06
AC6
SOFTWARE
ALA B:66 , THR B:146 , GLN B:150 , HOH B:513
BINDING SITE FOR RESIDUE NA B 478
07
AC7
SOFTWARE
TRP B:40 , GLN B:154 , TRP B:450
BINDING SITE FOR RESIDUE NA B 479
08
AC8
SOFTWARE
TYR B:185 , GLN B:418 , HOH B:544
BINDING SITE FOR RESIDUE NA B 480
09
AC9
SOFTWARE
GLY C:29 , GLY C:263 , HOH C:478
BINDING SITE FOR RESIDUE NA C 475
10
BC1
SOFTWARE
ARG C:272 , ASP C:274 , ALA C:361
BINDING SITE FOR RESIDUE NA C 476
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3d5ka_ (A:)
1b: SCOP_d3d5kb_ (B:)
1c: SCOP_d3d5kc_ (C:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Outer membrane efflux proteins (OEP)
(11)
Superfamily
:
Outer membrane efflux proteins (OEP)
(11)
Family
:
Outer membrane efflux proteins (OEP)
(6)
Protein domain
:
Outer membrane protein OprM
(2)
Pseudomonas aeruginosa [TaxId: 287]
(2)
1a
d3d5ka_
A:
1b
d3d5kb_
B:
1c
d3d5kc_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_3d5kA02 (A:86-126,A:297-338)
1b: CATH_3d5kB02 (B:86-126,B:297-338)
1c: CATH_3d5kC02 (C:86-126,C:297-338)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Single Sheet
(341)
Topology
:
Outer membrane efflux proteins (OEP)
(3)
Homologous Superfamily
:
Outer membrane efflux proteins (OEP)
(3)
Pseudomonas aeruginosa. Organism_taxid: 287. Strain: pao1.
(1)
1a
3d5kA02
A:86-126,A:297-338
1b
3d5kB02
B:86-126,B:297-338
1c
3d5kC02
C:86-126,C:297-338
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (225 KB)
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