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3CU7
Biol. Unit 3
Info
Asym.Unit (1.1 MB)
Biol.Unit 1 (568 KB)
Biol.Unit 2 (521 KB)
Biol.Unit 3, α-C (1.1 MB)
Biol.Unit 3 (1.1 MB)
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(1)
Title
:
HUMAN COMPLEMENT COMPONENT 5
Authors
:
F. Fredslund, G. R. Andersen
Date
:
16 Apr 08 (Deposition) - 10 Jun 08 (Release) - 06 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Mg Domain, Complement, Inflammation, Anaphylatoxin, Cleavage On Pair Of Basic Residues, Complement Alternate Pathway, Complement Pathway, Cytolysis, Glycoprotein, Immune Response, Inflammatory Response, Innate Immunity, Membrane Attack Complex, Secreted, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Fredslund, N. S. Laursen, P. Roversi, L. Jenner, C. L. P. Oliveira, J. S. Pedersen, M. A. Nunn, S. M. Lea, R. Discipio, L. Sottrup-Jensen, G. R. Andersen
Structure Of And Influence Of A Tick Complement Inhibitor O Human Complement Component 5
Nat. Immunol. V. 9 753 2008
[
close entry info
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
1g: CADMIUM ION (CDg)
1h: CADMIUM ION (CDh)
1i: CADMIUM ION (CDi)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CD
-1
Ligand/Ion
CADMIUM ION
2
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:909 , ASN A:911 , ILE A:922
BINDING SITE FOR RESIDUE NAG A 2001
02
AC2
SOFTWARE
ASN B:909 , ASN B:911 , ILE B:922
BINDING SITE FOR RESIDUE NAG B 2001
03
AC3
SOFTWARE
GLU A:247 , GLU B:247
BINDING SITE FOR RESIDUE CD A 2004
04
AC4
SOFTWARE
ASP A:471 , HIS A:473 , GLU A:480
BINDING SITE FOR RESIDUE CD A 2005
05
AC5
SOFTWARE
ASP A:264 , HIS A:753
BINDING SITE FOR RESIDUE CD A 2006
06
AC6
SOFTWARE
GLU A:339 , GLU A:764
BINDING SITE FOR RESIDUE CD A 2007
07
AC7
SOFTWARE
GLN A:886 , HIS A:894 , ALA A:1558 , GLU A:1589
BINDING SITE FOR RESIDUE CD A 2008
08
AC8
SOFTWARE
ASP B:471 , HIS B:473 , GLU B:480
BINDING SITE FOR RESIDUE CD B 2004
09
AC9
SOFTWARE
ASP B:264 , HIS B:753
BINDING SITE FOR RESIDUE CD B 2005
10
BC1
SOFTWARE
GLU B:339 , GLU B:764
BINDING SITE FOR RESIDUE CD B 2006
11
BC2
SOFTWARE
GLU A:1666 , GLN B:886 , HIS B:894
BINDING SITE FOR RESIDUE CD B 2007
[
close Site info
]
SAPs(SNPs)/Variants
(18, 36)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_038735 (V145I, chain A/B, )
02: VAR_048822 (L354M, chain A/B, )
03: VAR_023946 (T389I, chain A/B, )
04: VAR_038736 (R449G, chain A/B, )
05: VAR_001996 (F518S, chain A/B, )
06: VAR_014574 (I802I, chain A/B, )
07: VAR_071067 (R885C, chain A/B, )
08: VAR_071068 (R885H, chain A/B, )
09: VAR_038737 (R928Q, chain A/B, )
10: VAR_038738 (G933V, chain A/B, )
11: VAR_048823 (D966Y, chain A/B, )
12: VAR_038739 (I1033T, chain A/B, )
13: VAR_038740 (D1037N, chain A/B, )
14: VAR_038741 (Q1043K, chain A/B, )
15: VAR_014575 (M1053L, chain A/B, )
16: VAR_014576 (S1310N, chain A/B, )
17: VAR_048824 (V1365A, chain A/B, )
18: VAR_014577 (E1437D, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_038735
V
145
I
CO5_HUMAN
Polymorphism
17216529
A/B
V
145
I
02
UniProt
VAR_048822
L
354
M
CO5_HUMAN
Polymorphism
34552775
A/B
L
354
M
03
UniProt
VAR_023946
T
389
I
CO5_HUMAN
Polymorphism
---
A/B
T
389
I
04
UniProt
VAR_038736
R
449
G
CO5_HUMAN
Polymorphism
2230213
A/B
R
449
G
05
UniProt
VAR_001996
F
518
S
CO5_HUMAN
Polymorphism
---
A/B
F
518
S
06
UniProt
VAR_014574
V
802
I
CO5_HUMAN
Polymorphism
17611
A/B
I
802
I
07
UniProt
VAR_071067
R
885
C
CO5_HUMAN
Polymorphism
373359894
A/B
R
885
C
08
UniProt
VAR_071068
R
885
H
CO5_HUMAN
Polymorphism
56040400
A/B
R
885
H
09
UniProt
VAR_038737
R
928
Q
CO5_HUMAN
Polymorphism
41309892
A/B
R
928
Q
10
UniProt
VAR_038738
G
933
V
CO5_HUMAN
Polymorphism
41309902
A/B
G
933
V
11
UniProt
VAR_048823
D
966
Y
CO5_HUMAN
Polymorphism
2230212
A/B
D
966
Y
12
UniProt
VAR_038739
I
1033
T
CO5_HUMAN
Polymorphism
41311881
A/B
I
1033
T
13
UniProt
VAR_038740
D
1037
N
CO5_HUMAN
Polymorphism
41311883
A/B
D
1037
N
14
UniProt
VAR_038741
Q
1043
K
CO5_HUMAN
Polymorphism
41311887
A/B
Q
1043
K
15
UniProt
VAR_014575
M
1053
L
CO5_HUMAN
Polymorphism
17609
A/B
M
1053
L
16
UniProt
VAR_014576
S
1310
N
CO5_HUMAN
Polymorphism
17610
A/B
S
1310
N
17
UniProt
VAR_048824
V
1365
A
CO5_HUMAN
Polymorphism
16910245
A/B
V
1365
A
18
UniProt
VAR_014577
E
1437
D
CO5_HUMAN
Polymorphism
17612
A/B
E
1437
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: ANAPHYLATOXIN_1 (A:698-732,B:698-732)
2: ANAPHYLATOXIN_2 (A:698-732,B:698-732)
3: NTR (A:1532-1676,B:1532-1532)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ANAPHYLATOXIN_1
PS01177
Anaphylatoxin domain signature.
CO5_HUMAN
698-732
2
A:698-732
B:698-732
2
ANAPHYLATOXIN_2
PS01178
Anaphylatoxin domain profile.
CO5_HUMAN
698-732
2
A:698-732
B:698-732
3
NTR
PS50189
NTR domain profile.
CO5_HUMAN
1532-1676
2
A:1532-1676
B:1532-1532
[
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]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(15, 29)
Info
All SCOP Domains
01a: SCOP_d3cu7ae (A:982-1306)
01b: SCOP_d3cu7be (B:982-1306)
02a: SCOP_d3cu7aa (A:679-743)
02b: SCOP_d3cu7ba (B:679-743)
03a: SCOP_d3cu7ad (A:932-981,A:1307-1369)
03b: SCOP_d3cu7bd (B:932-981,B:1307-1369)
04a: SCOP_d3cu7a8 (A:1370-1513)
04b: SCOP_d3cu7b8 (B:1370-1513)
05a: SCOP_d3cu7a1 (A:20-120)
05b: SCOP_d3cu7b1 (B:20-120)
06a: SCOP_d3cu7a2 (A:121-222)
06b: SCOP_d3cu7b2 (B:121-222)
07a: SCOP_d3cu7a3 (A:223-348)
07b: SCOP_d3cu7b3 (B:223-348)
08a: SCOP_d3cu7a4 (A:349-458)
08b: SCOP_d3cu7b4 (B:349-458)
09a: SCOP_d3cu7a5 (A:459-564)
09b: SCOP_d3cu7b5 (B:459-564)
10a: SCOP_d3cu7a6 (A:565-606,A:770-822)
10b: SCOP_d3cu7b6 (B:565-606,B:770-822)
11a: SCOP_d3cu7a7 (A:823-931)
11b: SCOP_d3cu7b7 (B:823-931)
12a: SCOP_d3cu7af (A:1525-1676)
13a: SCOP_d3cu7ab (A:749-769)
13b: SCOP_d3cu7bb (B:749-769)
14a: SCOP_d3cu7ac (A:1514-1524)
14b: SCOP_d3cu7bc (B:1514-1532)
15a: SCOP_d3cu7a9 (A:607-673)
15b: SCOP_d3cu7b9 (B:607-673)
View:
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Classes
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(
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Families
(
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Terpenoid cyclases/Protein prenyltransferases
(151)
Family
:
Complement components
(19)
Protein domain
:
Thio-ester containing domain (TED) from Complement C5
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
01a
d3cu7ae
A:982-1306
01b
d3cu7be
B:982-1306
Fold
:
Anaphylotoxins (complement system)
(6)
Superfamily
:
Anaphylotoxins (complement system)
(6)
Family
:
Anaphylotoxins (complement system)
(6)
Protein domain
:
C5a anaphylotoxin
(5)
Human (Homo sapiens) [TaxId: 9606]
(4)
02a
d3cu7aa
A:679-743
02b
d3cu7ba
B:679-743
Class
:
All beta proteins
(24004)
Fold
:
CUB-like
(21)
Superfamily
:
Complement system CUB domain
(2)
Family
:
Complement system CUB domain
(2)
Protein domain
:
Complement C5 CUB domain
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
03a
d3cu7ad
A:932-981,A:1307-1369
03b
d3cu7bd
B:932-981,B:1307-1369
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Macroglobulin
(20)
Family
:
Alpha-macroglobulin receptor domain
(5)
Protein domain
:
Complement C5 MG8
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
04a
d3cu7a8
A:1370-1513
04b
d3cu7b8
B:1370-1513
Family
:
Complement C3 MG1-like
(2)
Protein domain
:
Complement C5 MG1
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
05a
d3cu7a1
A:20-120
05b
d3cu7b1
B:20-120
Family
:
Complement C3 MG2-like
(3)
Protein domain
:
Complement C5 MG2
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
06a
d3cu7a2
A:121-222
06b
d3cu7b2
B:121-222
Family
:
Complement C3 MG3-like
(2)
Protein domain
:
Complement C5 MG3
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
07a
d3cu7a3
A:223-348
07b
d3cu7b3
B:223-348
Family
:
Complement C3 MG4-like
(2)
Protein domain
:
Complement C5 MG4
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
08a
d3cu7a4
A:349-458
08b
d3cu7b4
B:349-458
Family
:
Complement C3 MG5-like
(2)
Protein domain
:
Complement C5 MG5
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
09a
d3cu7a5
A:459-564
09b
d3cu7b5
B:459-564
Family
:
Complement C3 MG6-like
(2)
Protein domain
:
Complement C5 MG6
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
10a
d3cu7a6
A:565-606,A:770-822
10b
d3cu7b6
B:565-606,B:770-822
Family
:
Complement C3 MG7-like
(2)
Protein domain
:
Complement C5 MG7
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
11a
d3cu7a7
A:823-931
11b
d3cu7b7
B:823-931
Fold
:
OB-fold
(1179)
Superfamily
:
TIMP-like
(22)
Family
:
Netrin-like domain (NTR/C345C module)
(4)
Protein domain
:
Complement C5 domain
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
12a
d3cu7af
A:1525-1676
Class
:
Peptides
(792)
Fold
:
Complement system alpha-prime linker
(2)
Superfamily
:
Complement system alpha-prime linker
(2)
Family
:
Complement system alpha-prime linker
(2)
Protein domain
:
Complement C5 alpha-prime linker
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
13a
d3cu7ab
A:749-769
13b
d3cu7bb
B:749-769
Fold
:
Complement system anchor region
(2)
Superfamily
:
Complement system anchor region
(2)
Family
:
Complement system anchor region
(2)
Protein domain
:
Complement C5 anchor region
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
14a
d3cu7ac
A:1514-1524
14b
d3cu7bc
B:1514-1532
Class
:
Small proteins
(3458)
Fold
:
Complement C3 linker domain-like
(2)
Superfamily
:
Complement C3 linker domain-like
(2)
Family
:
Complement C3 linker domain-like
(2)
Protein domain
:
Complement C5 linker domain
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
15a
d3cu7a9
A:607-673
15b
d3cu7b9
B:607-673
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(0, 0)
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all PFAM domains
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