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Asym. Unit
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Asym.Unit (205 KB)
Biol.Unit 1 (195 KB)
Biol.Unit 2 (195 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE (TM0831) FROM THERMOTOGA MARITIMA AT 2.15 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
10 Apr 08 (Deposition) - 22 Apr 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (2x)
Biol. Unit 2: C,D (2x)
Keywords
:
Tm0831, Putative Branched-Chain Amino Acid Aminotransferase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Amino-Acid Biosynthesis, Branched-Chain Amino Acid Biosynthesis, Pyridoxal Phosphate, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Branched-Chain Amino Acid Aminotransferase (Tm0831) From Thermotoga Maritima At 2. 15 Resolution
To Be Published
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Hetero Components
(6, 28)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
1b: CITRIC ACID (CITb)
1c: CITRIC ACID (CITc)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
3b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
3c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
3d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
3e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
3f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
3g: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDg)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
5a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
5b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
6a: UNKNOWN LIGAND (UNLa)
6b: UNKNOWN LIGAND (UNLb)
6c: UNKNOWN LIGAND (UNLc)
6d: UNKNOWN LIGAND (UNLd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CIT
3
Ligand/Ion
CITRIC ACID
2
CL
4
Ligand/Ion
CHLORIDE ION
3
MPD
7
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
4
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
5
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
6
UNL
4
Ligand/Ion
UNKNOWN LIGAND
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:50 , LYS A:133 , ILE A:140 , ARG A:144 , GLU A:164 , GLY A:165 , SER A:166 , PHE A:167 , SER A:168 , ASN A:169 , LEU A:188 , GLY A:190 , ILE A:191 , THR A:192 , THR A:228
BINDING SITE FOR RESIDUE PLP A 300
02
AC2
SOFTWARE
ARG C:50 , LYS C:133 , GLU C:164 , SER C:166 , PHE C:167 , SER C:168 , ASN C:169 , LEU C:188 , GLY C:190 , ILE C:191 , THR C:192 , THR C:228
BINDING SITE FOR RESIDUE PLP C 300
03
AC3
SOFTWARE
ARG B:85 , HIS B:227 , THR B:228 , SER B:229
BINDING SITE FOR RESIDUE UNL B 276
04
AC4
SOFTWARE
THR C:33 , HIS C:227 , THR C:228 , SER C:229
BINDING SITE FOR RESIDUE UNL C 301
05
AC5
SOFTWARE
THR A:33 , HIS A:227 , THR A:228 , SER A:229
BINDING SITE FOR RESIDUE UNL A 301
06
AC6
SOFTWARE
THR D:33 , ARG D:85 , HIS D:227 , THR D:228 , SER D:229
BINDING SITE FOR RESIDUE UNL D 275
07
AC7
SOFTWARE
LEU A:142 , ARG A:145 , GLU A:146 , PHE B:57 , PHE B:58 , ASP C:67 , LYS C:71
BINDING SITE FOR RESIDUE CIT A 302
08
AC8
SOFTWARE
ARG D:122 , PRO D:124 , ASP D:125 , LEU D:126 , ASN D:159
BINDING SITE FOR RESIDUE CIT D 276
09
AC9
SOFTWARE
ARG B:122 , PRO B:124 , ASP B:125 , LEU B:126 , LEU B:158 , ASN B:159
BINDING SITE FOR RESIDUE CIT B 277
10
BC1
SOFTWARE
ASN A:159 , ASP A:184 , SER A:185
BINDING SITE FOR RESIDUE MPD A 303
11
BC2
SOFTWARE
ASP A:125 , PRO A:129 , ASN B:119
BINDING SITE FOR RESIDUE MPD A 304
12
BC3
SOFTWARE
ASP C:184
BINDING SITE FOR RESIDUE MPD C 303
13
BC4
SOFTWARE
LYS B:52 , ASP B:56 , ASN B:59 , LEU B:60 , PHE C:66
BINDING SITE FOR RESIDUE MPD B 278
14
BC5
SOFTWARE
ASP B:125 , LEU B:126 , SER B:127 , THR B:128 , PRO B:129
BINDING SITE FOR RESIDUE MPD B 279
15
BC6
SOFTWARE
ASN C:119 , PHE D:57 , LEU D:126 , SER D:127 , THR D:128 , PRO D:129
BINDING SITE FOR RESIDUE MPD D 277
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: AA_TRANSFER_CLASS_4 (A:164-193,B:164-193,C:164-193,D:16...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AA_TRANSFER_CLASS_4
PS00770
Aminotransferases class-IV signature.
ILVE_THEMA
164-193
4
A:164-193
B:164-193
C:164-193
D:164-193
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3cswa_ (A:)
1b: SCOP_d3cswb_ (B:)
1c: SCOP_d3cswc_ (C:)
1d: SCOP_d3cswd_ (D:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
D-aminoacid aminotransferase-like PLP-dependent enzymes
(46)
Superfamily
:
D-aminoacid aminotransferase-like PLP-dependent enzymes
(46)
Family
:
automated matches
(13)
Protein domain
:
automated matches
(13)
Thermotoga maritima [TaxId: 243274]
(1)
1a
d3cswa_
A:
1b
d3cswb_
B:
1c
d3cswc_
C:
1d
d3cswd_
D:
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_3cswC01 (C:-1-104)
1b: CATH_3cswA01 (A:0-104)
1c: CATH_3cswB01 (B:0-104)
1d: CATH_3cswD01 (D:0-104)
2a: CATH_3cswA02 (A:105-273)
2b: CATH_3cswB02 (B:105-273)
2c: CATH_3cswC02 (C:105-273)
2d: CATH_3cswD02 (D:105-273)
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Homologous Superfamilies
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 1
(175)
Homologous Superfamily
:
[code=3.30.470.10, no name defined]
(39)
Thermotoga maritima msb8. Organism_taxid: 243274. Strain: msb8 / dsm 3109 / jcm 10099.
(1)
1a
3cswC01
C:-1-104
1b
3cswA01
A:0-104
1c
3cswB01
B:0-104
1d
3cswD01
D:0-104
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 2
(39)
Homologous Superfamily
:
D-amino Acid Aminotransferase, subunit A, domain 2
(39)
Thermotoga maritima msb8. Organism_taxid: 243274. Strain: msb8 / dsm 3109 / jcm 10099.
(1)
2a
3cswA02
A:105-273
2b
3cswB02
B:105-273
2c
3cswC02
C:105-273
2d
3cswD02
D:105-273
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Pfam Domains
(0, 0)
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all PFAM domains
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