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3CSW
Biol. Unit 1
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Asym.Unit (205 KB)
Biol.Unit 1 (195 KB)
Biol.Unit 2 (195 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE (TM0831) FROM THERMOTOGA MARITIMA AT 2.15 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
10 Apr 08 (Deposition) - 22 Apr 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (2x)
Biol. Unit 2: C,D (2x)
Keywords
:
Tm0831, Putative Branched-Chain Amino Acid Aminotransferase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Amino-Acid Biosynthesis, Branched-Chain Amino Acid Biosynthesis, Pyridoxal Phosphate, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Branched-Chain Amino Acid Aminotransferase (Tm0831) From Thermotoga Maritima At 2. 15 Resolution
To Be Published
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Hetero Components
(5, 26)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
1b: CITRIC ACID (CITb)
1c: CITRIC ACID (CITc)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
3b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
3c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
3d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
3e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
3f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
3g: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDg)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
5a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
5b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
6a: UNKNOWN LIGAND (UNLa)
6b: UNKNOWN LIGAND (UNLb)
6c: UNKNOWN LIGAND (UNLc)
6d: UNKNOWN LIGAND (UNLd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CIT
4
Ligand/Ion
CITRIC ACID
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
MPD
8
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
4
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
5
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
6
UNL
4
Ligand/Ion
UNKNOWN LIGAND
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC7 (SOFTWARE)
5: AC9 (SOFTWARE)
6: BC1 (SOFTWARE)
7: BC2 (SOFTWARE)
8: BC4 (SOFTWARE)
9: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:50 , LYS A:133 , ILE A:140 , ARG A:144 , GLU A:164 , GLY A:165 , SER A:166 , PHE A:167 , SER A:168 , ASN A:169 , LEU A:188 , GLY A:190 , ILE A:191 , THR A:192 , THR A:228
BINDING SITE FOR RESIDUE PLP A 300
2
AC3
SOFTWARE
ARG B:85 , HIS B:227 , THR B:228 , SER B:229
BINDING SITE FOR RESIDUE UNL B 276
3
AC5
SOFTWARE
THR A:33 , HIS A:227 , THR A:228 , SER A:229
BINDING SITE FOR RESIDUE UNL A 301
4
AC7
SOFTWARE
LEU A:142 , ARG A:145 , GLU A:146 , PHE B:57 , PHE B:58 , ASP C:67 , LYS C:71
BINDING SITE FOR RESIDUE CIT A 302
5
AC9
SOFTWARE
ARG B:122 , PRO B:124 , ASP B:125 , LEU B:126 , LEU B:158 , ASN B:159
BINDING SITE FOR RESIDUE CIT B 277
6
BC1
SOFTWARE
ASN A:159 , ASP A:184 , SER A:185
BINDING SITE FOR RESIDUE MPD A 303
7
BC2
SOFTWARE
ASP A:125 , PRO A:129 , ASN B:119
BINDING SITE FOR RESIDUE MPD A 304
8
BC4
SOFTWARE
LYS B:52 , ASP B:56 , ASN B:59 , LEU B:60 , PHE C:66
BINDING SITE FOR RESIDUE MPD B 278
9
BC5
SOFTWARE
ASP B:125 , LEU B:126 , SER B:127 , THR B:128 , PRO B:129
BINDING SITE FOR RESIDUE MPD B 279
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: AA_TRANSFER_CLASS_4 (A:164-193,B:164-193)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AA_TRANSFER_CLASS_4
PS00770
Aminotransferases class-IV signature.
ILVE_THEMA
164-193
4
A:164-193
B:164-193
-
-
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Exons
(0, 0)
Info
All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3cswa_ (A:)
1b: SCOP_d3cswb_ (B:)
1c: SCOP_d3cswc_ (C:)
1d: SCOP_d3cswd_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
D-aminoacid aminotransferase-like PLP-dependent enzymes
(46)
Superfamily
:
D-aminoacid aminotransferase-like PLP-dependent enzymes
(46)
Family
:
automated matches
(13)
Protein domain
:
automated matches
(13)
Thermotoga maritima [TaxId: 243274]
(1)
1a
d3cswa_
A:
1b
d3cswb_
B:
1c
d3cswc_
C:
1d
d3cswd_
D:
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_3cswC01 (C:-1-104)
1b: CATH_3cswA01 (A:0-104)
1c: CATH_3cswB01 (B:0-104)
1d: CATH_3cswD01 (D:0-104)
2a: CATH_3cswA02 (A:105-273)
2b: CATH_3cswB02 (B:105-273)
2c: CATH_3cswC02 (C:105-273)
2d: CATH_3cswD02 (D:105-273)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 1
(175)
Homologous Superfamily
:
[code=3.30.470.10, no name defined]
(39)
Thermotoga maritima msb8. Organism_taxid: 243274. Strain: msb8 / dsm 3109 / jcm 10099.
(1)
1a
3cswC01
C:-1-104
1b
3cswA01
A:0-104
1c
3cswB01
B:0-104
1d
3cswD01
D:0-104
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 2
(39)
Homologous Superfamily
:
D-amino Acid Aminotransferase, subunit A, domain 2
(39)
Thermotoga maritima msb8. Organism_taxid: 243274. Strain: msb8 / dsm 3109 / jcm 10099.
(1)
2a
3cswA02
A:105-273
2b
3cswB02
B:105-273
2c
3cswC02
C:105-273
2d
3cswD02
D:105-273
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Pfam Domains
(0, 0)
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all PFAM domains
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Asym.Unit (205 KB)
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