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3C9A
Asym. Unit
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Asym.Unit (106 KB)
Biol.Unit 1 (52 KB)
Biol.Unit 2 (53 KB)
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(1)
Title
:
HIGH RESOLUTION CRYSTAL STRUCTURE OF ARGOS BOUND TO THE EGF DOMAIN OF SPITZ
Authors
:
D. E. Klein, S. E. Stayrook, F. Shi, K. Narayan, M. A. Lemmon
Date
:
15 Feb 08 (Deposition) - 20 May 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: B,D (1x)
Biol. Unit 2: A,C (1x)
Keywords
:
Argos, Spitz, Egf, Egfr Inhibitor, Inhibitor, Developmental Protein, Glycoprotein, Secreted, Sensory Transduction, Vision, Differentiation, Egf-Like Domain, Endoplasmic Reticulum, Golgi Apparatus, Membrane, Neurogenesis, Transmembrane, Hormone/Signaling Protein Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
D. E. Klein, S. E. Stayrook, F. Shi, K. Narayan, M. A. Lemmon
Structural Basis For Egfr Ligand Sequestration By Argos.
Nature V. 453 1271 2008
(for further references see the
PDB file header
)
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Hetero Components
(1, 18)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
1d: BROMIDE ION (BRd)
1e: BROMIDE ION (BRe)
1f: BROMIDE ION (BRf)
1g: BROMIDE ION (BRg)
1h: BROMIDE ION (BRh)
1i: BROMIDE ION (BRi)
1j: BROMIDE ION (BRj)
1k: BROMIDE ION (BRk)
1l: BROMIDE ION (BRl)
1m: BROMIDE ION (BRm)
1n: BROMIDE ION (BRn)
1o: BROMIDE ION (BRo)
1p: BROMIDE ION (BRp)
1q: BROMIDE ION (BRq)
1r: BROMIDE ION (BRr)
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No.
Name
Count
Type
Full Name
1
BR
18
Ligand/Ion
BROMIDE ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG B:135 , CYS B:139 , CYS B:260
BINDING SITE FOR RESIDUE BR B 1
02
AC2
SOFTWARE
ARG A:135 , CYS A:139 , CYS A:260
BINDING SITE FOR RESIDUE BR A 2
03
AC3
SOFTWARE
ILE A:102 , HIS D:68
BINDING SITE FOR RESIDUE BR A 3
04
AC4
SOFTWARE
PRO A:331 , TYR A:339 , HIS B:392
BINDING SITE FOR RESIDUE BR A 4
05
AC5
SOFTWARE
SER A:395 , PRO B:337
BINDING SITE FOR RESIDUE BR A 7
06
AC6
SOFTWARE
SER A:263 , GLY A:265 , GLU A:267
BINDING SITE FOR RESIDUE BR A 9
07
AC7
SOFTWARE
CYS A:382 , CYS A:388
BINDING SITE FOR RESIDUE BR A 10
08
AC8
SOFTWARE
ASN A:334 , HIS B:286 , ALA B:399
BINDING SITE FOR RESIDUE BR B 11
09
AC9
SOFTWARE
GLN A:283 , LEU B:264
BINDING SITE FOR RESIDUE BR B 12
10
BC1
SOFTWARE
PHE B:294 , THR B:327
BINDING SITE FOR RESIDUE BR B 13
11
BC2
SOFTWARE
GLN B:394 , SER B:395
BINDING SITE FOR RESIDUE BR B 14
12
BC3
SOFTWARE
GLN B:283
BINDING SITE FOR RESIDUE BR B 15
13
BC4
SOFTWARE
PRO A:118 , GLY B:265 , GLU B:267 , ASP B:268
BINDING SITE FOR RESIDUE BR B 16
14
BC5
SOFTWARE
THR A:410 , SER A:412 , THR C:57
BINDING SITE FOR RESIDUE BR A 17
15
BC6
SOFTWARE
GLU C:56 , THR C:57
BINDING SITE FOR RESIDUE BR C 18
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 4)
Info
All PROSITE Patterns/Profiles
1: EGF_3 (C:50-94,D:50-94)
2: EGF_1 (C:82-93,D:82-93)
3: EGF_2 (C:82-93,D:82-93)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_3
PS50026
EGF-like domain profile.
SPITZ_DROME
78-122
2
C:50-94
D:50-94
2
EGF_1
PS00022
EGF-like domain signature 1.
SPITZ_DROME
110-121
2
C:82-93
D:82-93
3
EGF_2
PS01186
EGF-like domain signature 2.
SPITZ_DROME
110-121
2
C:82-93
D:82-93
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Exons
(0, 0)
Info
All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3c9aC00 (C:50-97)
1b: CATH_3c9aD00 (D:50-97)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Laminin
(270)
Homologous Superfamily
:
Laminin
(263)
Fruit fly (Drosophila melanogaster)
(2)
1a
3c9aC00
C:50-97
1b
3c9aD00
D:50-97
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (106 KB)
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