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3C7M
Biol. Unit 1
Info
Asym.Unit (88 KB)
Biol.Unit 1 (43 KB)
Biol.Unit 2 (43 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF REDUCED DSBL
Authors
:
C. U. Stirnimann, J. P. A. Grimshaw, R. Glockshuber, M. G. Grutter, G. Capitani
Date
:
07 Feb 08 (Deposition) - 15 Jul 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Redox Protein, Periplasm, Redox-Active Center, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. P. Grimshaw, C. U. Stirnimann, M. S. Brozzo, G. Malojcic, M. G. Grutter, G. Capitani, R. Glockshuber
Dsbl And Dsbi Form A Specific Dithiol Oxidase System For Periplasmic Arylsulfate Sulfotransferase In Uropathogenic Escherichia Coli.
J. Mol. Biol. V. 380 667 2008
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
2i: CHLORIDE ION (CLi)
2j: CHLORIDE ION (CLj)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
4a: TRIETHYLENE GLYCOL (PGEa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CD
-1
Ligand/Ion
CADMIUM ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
PEG
-1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
4
PGE
1
Ligand/Ion
TRIETHYLENE GLYCOL
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC6 (SOFTWARE)
06: AC7 (SOFTWARE)
07: AC8 (SOFTWARE)
08: AC9 (SOFTWARE)
09: BC1 (SOFTWARE)
10: BC4 (SOFTWARE)
11: BC5 (SOFTWARE)
12: BC6 (SOFTWARE)
13: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:63 , ASP A:113 , ASP B:156
BINDING SITE FOR RESIDUE CD A 196
02
AC2
SOFTWARE
GLU A:109
BINDING SITE FOR RESIDUE CD A 197
03
AC3
SOFTWARE
ASP A:156 , GLU B:63 , ASP B:113
BINDING SITE FOR RESIDUE CD B 196
04
AC4
SOFTWARE
ASP A:183 , ASP A:187
BINDING SITE FOR RESIDUE CD A 198
05
AC6
SOFTWARE
HIS A:105
BINDING SITE FOR RESIDUE CD A 199
06
AC7
SOFTWARE
GLU A:109
BINDING SITE FOR RESIDUE CL A 200
07
AC8
SOFTWARE
ASP A:183
BINDING SITE FOR RESIDUE CL A 201
08
AC9
SOFTWARE
GLU A:63 , ARG A:110 , ASP A:113 , ASP B:156 , LYS B:159
BINDING SITE FOR RESIDUE CL A 202
09
BC1
SOFTWARE
ASP A:156 , LYS A:159 , GLU B:63 , ARG B:110
BINDING SITE FOR RESIDUE CL A 203
10
BC4
SOFTWARE
TYR A:104 , LYS A:108 , ARG A:110
BINDING SITE FOR RESIDUE CL A 204
11
BC5
SOFTWARE
PRO A:30 , HIS A:105
BINDING SITE FOR RESIDUE CL A 205
12
BC6
SOFTWARE
LYS A:23 , PHE A:53 , PRO A:55 , PHE A:93 , LYS A:97
BINDING SITE FOR RESIDUE CL A 206
13
BC8
SOFTWARE
ALA A:38
BINDING SITE FOR RESIDUE PGE A 207
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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;
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3c7ma_ (A:)
1b: SCOP_d3c7mb_ (B:)
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Protein Domains
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)
(
)
Organisms
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)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
automated matches
(347)
Protein domain
:
automated matches
(347)
Escherichia coli [TaxId: 562]
(3)
1a
d3c7ma_
A:
1b
d3c7mb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein
Nucleic
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (88 KB)
Header - Asym.Unit
Biol.Unit 1 (43 KB)
Header - Biol.Unit 1
Biol.Unit 2 (43 KB)
Header - Biol.Unit 2
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