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Getting 'Exon' information from database.
3C5T
Asym. Unit
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Asym.Unit (32 KB)
Biol.Unit 1 (26 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE LIGAND-BOUND GLUCAGON-LIKE PEPTIDE-1 RECEPTOR EXTRACELLULAR DOMAIN
Authors
:
S. Runge
Date
:
01 Feb 08 (Deposition) - 19 Feb 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Ligand-Bound G Protein-Coupled Receptor Extracellular Domain, G- Protein Coupled Receptor, Glycoprotein, Membrane, Transducer, Transmembrane, Amidation, Cleavage On Pair Of Basic Residues, Secreted, Signaling Protein-Signaling Protein Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. Runge, H. Thogersen, K. Madsen, J. Lau, R. Rudolph
Crystal Structure Of The Ligand-Bound Glucagon-Like Peptide-1 Receptor Extracellular Domain
J. Biol. Chem. V. 283 11340 2008
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: DECYL 4-O-ALPHA-D-GLUCOPYRANOSYL-1... (10Ma)
View:
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Label:
No.
Name
Count
Type
Full Name
1
10M
1
Ligand/Ion
DECYL 4-O-ALPHA-D-GLUCOPYRANOSYL-1-THIO-BETA-D-GLUCOPYRANOSIDE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:43 , PHE A:80 , ASN A:82 , HIS A:99 , TYR A:101 , HOH A:164
BINDING SITE FOR RESIDUE 10M A 1
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_018926 (R44H, chain A, )
2: VAR_018927 (R131Q, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_018926
R
44
H
GLP1R_HUMAN
Polymorphism
2295006
A
R
44
H
2
UniProt
VAR_018927
R
131
Q
GLP1R_HUMAN
Polymorphism
3765467
A
R
131
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: G_PROTEIN_RECEP_F2_3 (A:45-130)
2: G_PROTEIN_RECEP_F2_1 (A:62-86)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
G_PROTEIN_RECEP_F2_3
PS50227
G-protein coupled receptors family 2 profile 1.
GLP1R_HUMAN
45-130
1
A:45-130
2
G_PROTEIN_RECEP_F2_1
PS00649
G-protein coupled receptors family 2 signature 1.
GLP1R_HUMAN
62-86
1
A:62-86
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Exons
(3, 3)
Info
All Exons
Exon 1.2 (A:28-59)
Exon 1.3 (A:59-95)
Exon 1.4 (A:95-131)
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000373256
1
ENSE00001459910
chr6:
39016574-39016694
121
GLP1R_HUMAN
1-26
26
0
-
-
1.2
ENST00000373256
2
ENSE00000750428
chr6:
39024173-39024269
97
GLP1R_HUMAN
27-59
33
1
A:28-59
32
1.3
ENST00000373256
3
ENSE00000750429
chr6:
39025248-39025355
108
GLP1R_HUMAN
59-95
37
1
A:59-95
37
1.4
ENST00000373256
4
ENSE00000750430
chr6:
39033487-39033605
119
GLP1R_HUMAN
95-134
40
1
A:95-131
37
1.5
ENST00000373256
5
ENSE00000750431
chr6:
39033973-39034079
107
GLP1R_HUMAN
135-170
36
0
-
-
1.6
ENST00000373256
6
ENSE00000750432
chr6:
39040638-39040791
154
GLP1R_HUMAN
170-221
52
0
-
-
1.7
ENST00000373256
7
ENSE00000750433
chr6:
39041386-39041545
160
GLP1R_HUMAN
222-275
54
0
-
-
1.8
ENST00000373256
8
ENSE00000750434
chr6:
39046098-39046158
61
GLP1R_HUMAN
275-295
21
0
-
-
1.9
ENST00000373256
9
ENSE00000750435
chr6:
39046733-39046802
70
GLP1R_HUMAN
295-318
24
0
-
-
1.10
ENST00000373256
10
ENSE00000750436
chr6:
39046888-39046976
89
GLP1R_HUMAN
319-348
30
0
-
-
1.11
ENST00000373256
11
ENSE00000750438
chr6:
39047340-39047478
139
GLP1R_HUMAN
348-394
47
0
-
-
1.12
ENST00000373256
12
ENSE00000750439
chr6:
39048474-39048515
42
GLP1R_HUMAN
395-408
14
0
-
-
1.13
ENST00000373256
13
ENSE00001027349
chr6:
39053682-39055519
1838
GLP1R_HUMAN
409-463
55
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3c5tb1 (B:9-33)
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Peptides
(792)
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Peptide hormones
(51)
Superfamily
:
Peptide hormones
(51)
Family
:
Peptide hormones
(51)
Protein domain
:
Exendin-4
(3)
Synthetic
(3)
1a
d3c5tb1
B:9-33
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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